| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1559 |
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| Symbol | dxr |
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| ID | 3520686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1602504 |
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| End bp | 1603739 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637284022 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_268301 |
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| Protein GI | 71280222 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.189544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTAAAC GTCAACTTTG TATATTAGGT TCAACGGGCT CAATTGGTTG TAGTACTCTC
GATGTAGTAA GACTTCACCC TGAACGATTC CAAGTCATCA GTTTAGCTGC TTATACTAGC
GTTGATGTGA TATTCGAACA ATGTATTGAA TTTAAGCCAC AGCAAGTAGT ACTCGTCTCT
AGTGAACACG CAGCTCTACT TACTCAAAAA TTAAATGACG CAAATGTTAG TAATATTACT
GTTTTATCAG GTGAACAAGC TTTAATTGAT ATTGCCGAGT GTCAAAATTC AGATACAGTG
ATGGCGTCTA TTGTCGGTGC TTCTGGTTTG TTACCGACGC TCGCCGCAGT GAATGCGGGA
AAACGAGTGT TATTAGCGAA TAAAGAAGCC TTAGTAACAT CAGGCGCTAT TTTTATGGCT
GCTGTAAAAG CCTCAGGCGC AGAGCTTTTA CCTATCGACA GTGAGCACAA TGCAATCTTC
CAGTGCTTGC CATCCCAGCA GCAAGCTGAA ATAGGTGAAT GCCAACTTCT TGCCAATGGC
ATCAGTAAGA TATTGTTAAC TGGCTCTGGC GGGCCTTTTA GAACTAGAGC TATTGATACC
CTAGAATCAG TGACACCTTC ACAGGCGTGC GCTCACCCGA ACTGGGATAT GGGACGAAAA
ATATCCGTTG ATTCTGCCAC TATGATGAAT AAAGGTCTTG AATTTATTGA AGCTAAGTGG
CTTTTTAATG TTGAAGCTGA AGATATTCAA GTGGTTTTGC ACCCCCAAAG CACCATACAT
TCAATGGTAC AGTACAAAGA TGGCTCTGTA ATTGCGCAAA TGGGCAATCC AGATATGCGT
ACTCCAATAG CCCATGCTTT GAGCTTTCCA GAACGTATTG AATCAGGCGT AGCACCGCTA
GATTTTTTTA ATACTCCCTC TTTTGAATTT CAACCCGTTG ATTTTGAACG ATATCCTAAT
CTGGAACTTG CAATTGAAGC GTGTAAGCAA GGTCAAGCTG CTTGTACTGC GCTCAATGCT
GCCAATGAAA TTGCTGTTGC TGCATTTCTA GACGAAAAAA TAAAATTTAC CGATATTTAT
AAAATAAATG AAACTTCTGT GAAAAAATTT GTCTCACAAA AGGTAGATAA TATTAATGAG
GTTATTGCCC TAGATGAGCA AGCGCGTTCA TTTGCACAAA CATTGTTAGC AGATTTTTTG
CAAACTGAAG CGCTATCGCA AAAGGGTAAT AAATAA
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| Protein sequence | MSKRQLCILG STGSIGCSTL DVVRLHPERF QVISLAAYTS VDVIFEQCIE FKPQQVVLVS
SEHAALLTQK LNDANVSNIT VLSGEQALID IAECQNSDTV MASIVGASGL LPTLAAVNAG
KRVLLANKEA LVTSGAIFMA AVKASGAELL PIDSEHNAIF QCLPSQQQAE IGECQLLANG
ISKILLTGSG GPFRTRAIDT LESVTPSQAC AHPNWDMGRK ISVDSATMMN KGLEFIEAKW
LFNVEAEDIQ VVLHPQSTIH SMVQYKDGSV IAQMGNPDMR TPIAHALSFP ERIESGVAPL
DFFNTPSFEF QPVDFERYPN LELAIEACKQ GQAACTALNA ANEIAVAAFL DEKIKFTDIY
KINETSVKKF VSQKVDNINE VIALDEQARS FAQTLLADFL QTEALSQKGN K
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