Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1325 |
Symbol | |
ID | 3519035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 1363906 |
End bp | 1365192 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637283789 |
Product | sensory box protein |
Protein accession | YP_268068 |
Protein GI | 71278350 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.294155 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTTTC TTAGTGATCA CGACACGCTT ATCAGCTCAA TTGAGGCTAT TGGCGCTAGT TTTGCTGTAT TTGAGTTCGA CCCTCAGTCG GTAGCTTTTG AACTGGTCAG TTGCAATAGT CGCTATGAGG ATCTTATGGG ATATTCAAGC GCAAAAGCAC TTGGTCAGCC ACTGACAACA ATCTTCCCAA GATACATTCA CAACCCATTA AAAGAAGCAT TCATTCATTG TAAAAATGAA CGCATTGCTT TGGAAACTGA GATTGTGCTT GACTATAAAG GCCAAGAAAG ATGCTGGCGT TCAATAGTAT CTCCTATCGT AAACTCAGCT GATGAAAAAT TTCGAATCAT TCAAACCTGT GTTGAAATCA CTGAAAAAAA GGTCTTAGAA AAACAGCTAA ACCTCTCAAT GAAACGATTC GAAGCGGTAG TTAATAACGC TTATGACGGT ATAATTACCA TTGATGAACA GCAAAATGTG AAGCTTTTTA ACGAAGCTGC CCAATCAATG TTTGGCTACA GTGAACAAGA AATAATGGGT CAGCCACTCA CCAAGTTATT ACCTGAAAAA TACCAAGCTA AACATCATGG TTATGTCGAA GGGTTCAAAA GATCACAAGT AGATTCTAGA CCCATGCAAA CTAGAGCAGC CGTGCAAGGC CTTAGAAAAG ACGGCAGTGA ATTTGCCATT GAAGTGACCA TATCAAAAAT TCGTATTGCT GATAATGTTG AATTTACTGC GGTTATCAGA GACATTTCTG AAAAAAATCA ATTACTAGAA GAGTTAATCT TATCCTCAAG AAGAGATCCT TTAACGGAAC TGTACAACCG CCGATATTTT ACCGAATTAC TCCATTCAGA AATTACTCGT TCTAGAAGAT TCAAACGAGG TTTCTCGCTG TTAATGTTAG ATATTGACCA TTTTAAGTCA ATCAACGATA GGTATGGACA TGCCTGTGGA GACGCTGCTT TAATCGCCTT TTCAAAAGCT GTGACCAACA GCATTAGGGA AGTAGATACT ATTTGCCGAT GGGGTGGAGA AGAGTTTTTG GTACTCTTGC CAGAAATACC AAAAGTAACC GCCATGGTTG TCGCTGAGAA AATCAGAAAA AACATTGAAA ACCTTGAAAC CATTTATGAA GGTGATTTGA TAAAAGTTAC TGTATCTATT GGTTTAGAGT ACTTTTCTGG CGACGCTATT GAAATGAGCA GCATGATCAA TAAAGTAGAT CAAATATTGT ATAGAGCAAA GGACACCGGA AGAAATAAAA TATCCACTGA AATTTAG
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Protein sequence | MFFLSDHDTL ISSIEAIGAS FAVFEFDPQS VAFELVSCNS RYEDLMGYSS AKALGQPLTT IFPRYIHNPL KEAFIHCKNE RIALETEIVL DYKGQERCWR SIVSPIVNSA DEKFRIIQTC VEITEKKVLE KQLNLSMKRF EAVVNNAYDG IITIDEQQNV KLFNEAAQSM FGYSEQEIMG QPLTKLLPEK YQAKHHGYVE GFKRSQVDSR PMQTRAAVQG LRKDGSEFAI EVTISKIRIA DNVEFTAVIR DISEKNQLLE ELILSSRRDP LTELYNRRYF TELLHSEITR SRRFKRGFSL LMLDIDHFKS INDRYGHACG DAALIAFSKA VTNSIREVDT ICRWGGEEFL VLLPEIPKVT AMVVAEKIRK NIENLETIYE GDLIKVTVSI GLEYFSGDAI EMSSMINKVD QILYRAKDTG RNKISTEI
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