Gene CPS_1288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1288 
Symbol 
ID3521685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1330142 
End bp1332199 
Gene Length2058 bp 
Protein Length685 aa 
Translation table11 
GC content35% 
IMG OID637283752 
Productsensory box protein 
Protein accessionYP_268031 
Protein GI71281214 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.538668 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATTCC CCTCAATCCA ACTTTTAAAT TTAATACCAG ACACTGTACT TATTGTTAAT 
AAAAAAGCTG AGATTATATG GATAAATAAC AATATTACTA ATTTGTTAGG TTATTTACCT
GATGAACTAC TCGGTAAATC AATTGAATGT TTGGTACCAA GTCGCACCAG AGAGAAGCAC
GTAAACCTTA GAAATTCTTT TATAAACAAA CCGAATAAAC GTTCAATGAA TCAAGGCTCT
GGACTTTGGG CTGTTCATAA GAAAAATCAT GAAATACCTG TTTGTATCGA TTTGAATCAT
TATGAAGAGT CCGGCGAAAA ATTTACTGTG TGCTCTATTC GATTATTAAG TGAACAGGAA
TTAGTCGCAT CAACAATGCA AAAATTACAC GAACGTTTAG AGTTTTCGCA ATCGTTAGCA
CATGTTGGTA CCTGGGATTG GGATATTACG AATGAAACTT TGGCTTGGAC CGATGAAACT
TATCGAATAT TTGGCGTAAA GCCACAAGAG TTCAAGGCAA CTTATGAAGC CTTTCTTTTT
TACATACATG CAGATGATAG GCAGGCTGTT ATTGATGCTG TAAACGACGC GATAAATAAC
GATAGCTCAT ACAGTATAAA ACATAGAGTC ATTAGGCCTT CTGGCGAAAT TAGAGAGGTA
TTAGAAAAGG GGCAAGTTCT TCGTGATGAA AATGGTAAAG CTAGTCGTAT AATTGGTGCG
GTATTGGATA TCACAGAACT TAATCAGAGC AAAGAAAAAT TAGAAAAATT AGCGCATTAC
GATGAGAAAA CCCAATTACC CAACCGAGTG TTATGCCGAA AAGAAATTGA AATAAGAATT
TCTCATGCTC TTTTAAACAA CAAAAAATTC GCCATTTTAT TTATTGATTT GGATCATTTC
AAAAATATCA ATGACACACA AGGACATCTA GCGGGTGATG AGTTTTTACA TGAAATGTCA
CAAAAATTAT TAACTATTAT CCCTAAAGGG ATGTTTTTAG CAATCCTTGG CGGGGATGAA
TTCATTATCA TTACTGATTA TAGTGATGAT GAGGAGGAGA TTAAAAATAA AGTCACGAGA
CTTGCTAAAC AGCTTATATT ATTAATTCCA ACCAAGAAGT CTTATGAGAA TTTCTCAATC
GATATTACCG CTAGCATTGG CATAGCTTTA TACCCAAACC ACGGAAATAA TTTTACTAGT
TTATTAAGCT CGGCAGACAA TGCCATGTAT CAAGTGAAAA ATACCGGTAG AAATAATTAT
GCTATGTATC ACCCCGATAT AGAGCAGAAA AGATTAAGAG AGCTGCAACT AATTAGTGAT
ATGCGTACAG GTTTAAAAAA AGGCCAATTT ACAGTGCACT ATCAAGCTAA GCAAAGTTTG
AAAACAGATG AGTTGATAGG ATGTGAAGCA TTAATACGTT GGCAGCATCA TACGCTAGGC
AATATTCCTC CATTAGAGTT TATATCACTC GCTGAAAGCT CTGGACTTAT TATTCCTATT
GGTAAGTTTG TTTTAGAGCA ATCGTGTTTG TTCATAAAGC AGTGGCAAGC ACATTCCGAC
AAGTCATTAG TTGTCTCGGT AAATGTTTCT GCCCTGCAAC TTAAAGACCC TCTGTTTAAA
GAAGAGGTAT TACAAGTAAT TAACAGCGCA GGTATTAGTG GCCATAATAT CGAATTAGAA
TTAACAGAAA GCCTATTGAT GGAAAATATA GAAGCTACAA TACAAACATT ACATGACTTA
AAAGAAATAG GCGTATCTAT CTCAATTGAT GATTTTGGTA CTGGTTACTC CTCGTTAAGT
TATTTGCAAA AATTACCTGT TGATACCTTA AAGATAGATA AGAGCTTTAT TGATTCACTC
TCATCTTCAG ATGAAGATAC TTGGATAGTT ATAAATACGA TCTCCTTAGC ATCAGGCTTG
AAACTTAAAA CAGTAGCCGA AGGGGTTGAA ACGCAAGAGC AAAAGTCTAT TTTAGCTGAT
TTAGGTTGCG ACATATTACA GGGCTACTTG TATAGTAAAC CAATCCCTAA AAATGAATTT
TTTATGAAAT TCAAATAA
 
Protein sequence
MQFPSIQLLN LIPDTVLIVN KKAEIIWINN NITNLLGYLP DELLGKSIEC LVPSRTREKH 
VNLRNSFINK PNKRSMNQGS GLWAVHKKNH EIPVCIDLNH YEESGEKFTV CSIRLLSEQE
LVASTMQKLH ERLEFSQSLA HVGTWDWDIT NETLAWTDET YRIFGVKPQE FKATYEAFLF
YIHADDRQAV IDAVNDAINN DSSYSIKHRV IRPSGEIREV LEKGQVLRDE NGKASRIIGA
VLDITELNQS KEKLEKLAHY DEKTQLPNRV LCRKEIEIRI SHALLNNKKF AILFIDLDHF
KNINDTQGHL AGDEFLHEMS QKLLTIIPKG MFLAILGGDE FIIITDYSDD EEEIKNKVTR
LAKQLILLIP TKKSYENFSI DITASIGIAL YPNHGNNFTS LLSSADNAMY QVKNTGRNNY
AMYHPDIEQK RLRELQLISD MRTGLKKGQF TVHYQAKQSL KTDELIGCEA LIRWQHHTLG
NIPPLEFISL AESSGLIIPI GKFVLEQSCL FIKQWQAHSD KSLVVSVNVS ALQLKDPLFK
EEVLQVINSA GISGHNIELE LTESLLMENI EATIQTLHDL KEIGVSISID DFGTGYSSLS
YLQKLPVDTL KIDKSFIDSL SSSDEDTWIV INTISLASGL KLKTVAEGVE TQEQKSILAD
LGCDILQGYL YSKPIPKNEF FMKFK