| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1240 |
|---|
| Symbol | lysA |
|---|
| ID | 3520097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1273535 |
|---|
| End bp | 1274797 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283704 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_267983 |
|---|
| Protein GI | 71279638 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCAG TTAGCTATTT CCCGCACAAA AATAATGAAA TGTTTGTTGA AAATATTGCT
CTTAGCGATA TTGCCCAGCA TGTACAAACT CCCTTTTATT GCTACTCAAG CACAGCCATT
GAAACAAGTT TTCAAGCATA TAAAAATGCT TTTAGCAGTC AAGATGCTCT GATTTGTTAT
GCAGTAAAAG CCAATAGTAA CCAAGCGGTA CTTGCCACCT TAGCTAAATT AGGCTCAGGT
GCAGACGTGG TATCAATGGG TGAAATTCGC CGCGCAATTA CGGCAGGCAT TCCAGCGGAT
AAAATTGTCT ACTCTGGTGT TGCGAAAACT GAAGAAGAAA TTCACTACGC GTTATCGTTA
GGTATTTTCC AGTTTAATGT TGAGTCTGAG CCAGAGCTAG AGTTGATATC AAAAGTAGCC
ACCTCCCTTA ACAAAACAGC TGCGATTGCT TTTCGTATTA ATCCTGATGT TTGTGCGCAA
ACCCATGCAA AAATTTCCAC AGGGAAAGCA GAAAACAAGT TTGGCGTCCC CATTTCTAAA
GCCCGAATTG CCTATAAACG AGCCGCATCA TTACCTGGTA TAAAAGTGCA AGGTGTTGAT
GTACATATTG GTTCTCAATT AACTAGTCTG GCTCCTTTTG AAGAAGCGTA CCAGCGAATT
GCTGAACTAG TTAATGAATT AAGAGCAGAT GGTCATGAAA TTAGTGTTGT TGATGTTGGC
GGTGGTTTAG GTATTACTTA TCTTGATGAA ATCATCCCGA GCAAGCAAAG CTACGCTGAT
TTAGTTAAGG CACAACTTGG TCACCTTAAT TGCAAAATTA TTATTGAGCC GGGTCGTTCA
TTATTAGGTA ATGCGGGCAT TCTTGTCTCA AGTGTGGTTT TTATAAAAAA TGGCGAAGAA
CGACAATTTT TGATACTTGA TGCGGGTATG AATGACTTGA TCAGACCGAG TATGTATGAA
GCATATCATC AAATTATTGC CGTGAATAAA GGTGCTAACG AATTAAAAAC CTACGACGTG
GTAGGCCCTG TTTGTGAAAC AGGCGATACT TTTGCTAAAG CAAGACAAGT ACATAAATCA
GATGCAGGTG ATTTGATTGC GATTATGAGC AGTGGTGCAT ACGGTTCAGT TATGTCATCT
AGCTATAATA CGAGAATGTT GGCGCCTGAA GTGATGGTGA AGGGTAATGA ATTTGCTATA
GTAAAAAAAC GCCCTAGTTA CGAAGAGATT ATCAAACAAG ATATTATACC AAGCTGGCTG
TAA
|
|---|
| Protein sequence | MTPVSYFPHK NNEMFVENIA LSDIAQHVQT PFYCYSSTAI ETSFQAYKNA FSSQDALICY
AVKANSNQAV LATLAKLGSG ADVVSMGEIR RAITAGIPAD KIVYSGVAKT EEEIHYALSL
GIFQFNVESE PELELISKVA TSLNKTAAIA FRINPDVCAQ THAKISTGKA ENKFGVPISK
ARIAYKRAAS LPGIKVQGVD VHIGSQLTSL APFEEAYQRI AELVNELRAD GHEISVVDVG
GGLGITYLDE IIPSKQSYAD LVKAQLGHLN CKIIIEPGRS LLGNAGILVS SVVFIKNGEE
RQFLILDAGM NDLIRPSMYE AYHQIIAVNK GANELKTYDV VGPVCETGDT FAKARQVHKS
DAGDLIAIMS SGAYGSVMSS SYNTRMLAPE VMVKGNEFAI VKKRPSYEEI IKQDIIPSWL
|
|---|
| |