Gene CPS_1193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1193 
SymbolsohB 
ID3518753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1220779 
End bp1221828 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content37% 
IMG OID637283657 
Productputative periplasmic protease 
Protein accessionYP_267936 
Protein GI71278653 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAATTTT TATATGAATA CGGCTTGTTT TTAGCGAAAG CCATTACTTT TGTTTTGGCT 
GTTATTGCCA TTATTATTGC GATTGCTGGT GCAGCGACGA AACAGCAGCA CAAAAAAGGT
GAGCTTGATA TCACCGACTT ATCTGAACAG TTTACTGAGA CTGAAGAAGA TATTATTCAT
GCATTATTGA GCAAGGATGA ATTTAAAGAG AAAGAAAAAG CAGATAAAAA GCTGGCTAAA
GAGCAAGCGA AAGCAGATAA AAAATCAGCT AAAGCTGGTG AAGATAAAGA ACCTAGTAAA
TCACATGTAT TTGTGGTTGA TTTCAACGGC AGTATTGATG CTAAAGAAGT TAGTTCTTTA
CGTGAAGAGG TGTCAGCGAT ACTTTCTGTG GCGAAACCTG AAGATGAAGT TTTTGTTCGT
TTAGAAAGTG GTGGCGGTAT GGTACATGGT TATGGTTTAG CATCTTCACA GCTTGATCGT
ATTCGTCAGC ACAATATTCC ACTGACAGTA TCAGTAGATA AAGTAGCTGC TAGTGGCGGT
TATATGATGG CTTGTGTAGC AAATAATATT ATCTCTGCAC CTTTTGCTAT CTTAGGTTCT
ATTGGTGTTA TTGCCCAAGT ACCAAACTTC AATAAACTAC TAAAGAAACA TGACATTGAT
TTTGAACAGT TTACTGCTGG TGAATTTAAA CGCACTGTAA CTATGTTCGG CGAAAACACA
GAAAAAGGTA AAGAAAAATT CATCGAAGAA TTAGAAGAAA CTCACGTTCT ATTTAAAAAC
TTCGTTAGTG AGCGCAGACC AAGTTTAGAT ATTGTTAAAG TTGCAACGGG CGAGCATTGG
TTTGGTACAA CAGCCTTAGA ACTTGGCCTA GTTGATAGTA TCCAAACGAG TGATGATTAT
TTACAAGGTA AAAGTAAAAG CCATAAAGTC GTTGCCATTA AATATGAAGT GAAAAAAGGT
TTGGCTGAAA AATTCTCTAA AGCGGCTTCA TTATCAGCTG AAAGCTTTTT AGGTAAACTA
ATACAGCGCA ATAATATCTT CCCTAGTTAG
 
Protein sequence
MEFLYEYGLF LAKAITFVLA VIAIIIAIAG AATKQQHKKG ELDITDLSEQ FTETEEDIIH 
ALLSKDEFKE KEKADKKLAK EQAKADKKSA KAGEDKEPSK SHVFVVDFNG SIDAKEVSSL
REEVSAILSV AKPEDEVFVR LESGGGMVHG YGLASSQLDR IRQHNIPLTV SVDKVAASGG
YMMACVANNI ISAPFAILGS IGVIAQVPNF NKLLKKHDID FEQFTAGEFK RTVTMFGENT
EKGKEKFIEE LEETHVLFKN FVSERRPSLD IVKVATGEHW FGTTALELGL VDSIQTSDDY
LQGKSKSHKV VAIKYEVKKG LAEKFSKAAS LSAESFLGKL IQRNNIFPS