Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1193 |
Symbol | sohB |
ID | 3518753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1220779 |
End bp | 1221828 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637283657 |
Product | putative periplasmic protease |
Protein accession | YP_267936 |
Protein GI | 71278653 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAATTTT TATATGAATA CGGCTTGTTT TTAGCGAAAG CCATTACTTT TGTTTTGGCT GTTATTGCCA TTATTATTGC GATTGCTGGT GCAGCGACGA AACAGCAGCA CAAAAAAGGT GAGCTTGATA TCACCGACTT ATCTGAACAG TTTACTGAGA CTGAAGAAGA TATTATTCAT GCATTATTGA GCAAGGATGA ATTTAAAGAG AAAGAAAAAG CAGATAAAAA GCTGGCTAAA GAGCAAGCGA AAGCAGATAA AAAATCAGCT AAAGCTGGTG AAGATAAAGA ACCTAGTAAA TCACATGTAT TTGTGGTTGA TTTCAACGGC AGTATTGATG CTAAAGAAGT TAGTTCTTTA CGTGAAGAGG TGTCAGCGAT ACTTTCTGTG GCGAAACCTG AAGATGAAGT TTTTGTTCGT TTAGAAAGTG GTGGCGGTAT GGTACATGGT TATGGTTTAG CATCTTCACA GCTTGATCGT ATTCGTCAGC ACAATATTCC ACTGACAGTA TCAGTAGATA AAGTAGCTGC TAGTGGCGGT TATATGATGG CTTGTGTAGC AAATAATATT ATCTCTGCAC CTTTTGCTAT CTTAGGTTCT ATTGGTGTTA TTGCCCAAGT ACCAAACTTC AATAAACTAC TAAAGAAACA TGACATTGAT TTTGAACAGT TTACTGCTGG TGAATTTAAA CGCACTGTAA CTATGTTCGG CGAAAACACA GAAAAAGGTA AAGAAAAATT CATCGAAGAA TTAGAAGAAA CTCACGTTCT ATTTAAAAAC TTCGTTAGTG AGCGCAGACC AAGTTTAGAT ATTGTTAAAG TTGCAACGGG CGAGCATTGG TTTGGTACAA CAGCCTTAGA ACTTGGCCTA GTTGATAGTA TCCAAACGAG TGATGATTAT TTACAAGGTA AAAGTAAAAG CCATAAAGTC GTTGCCATTA AATATGAAGT GAAAAAAGGT TTGGCTGAAA AATTCTCTAA AGCGGCTTCA TTATCAGCTG AAAGCTTTTT AGGTAAACTA ATACAGCGCA ATAATATCTT CCCTAGTTAG
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Protein sequence | MEFLYEYGLF LAKAITFVLA VIAIIIAIAG AATKQQHKKG ELDITDLSEQ FTETEEDIIH ALLSKDEFKE KEKADKKLAK EQAKADKKSA KAGEDKEPSK SHVFVVDFNG SIDAKEVSSL REEVSAILSV AKPEDEVFVR LESGGGMVHG YGLASSQLDR IRQHNIPLTV SVDKVAASGG YMMACVANNI ISAPFAILGS IGVIAQVPNF NKLLKKHDID FEQFTAGEFK RTVTMFGENT EKGKEKFIEE LEETHVLFKN FVSERRPSLD IVKVATGEHW FGTTALELGL VDSIQTSDDY LQGKSKSHKV VAIKYEVKKG LAEKFSKAAS LSAESFLGKL IQRNNIFPS
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