Gene CPS_1122 details

Gene Information

• Locus tag: CPS_1122
• Symbol: secD
• ID: 3523093
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 1144707
• End bp: 1146554
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637283586
• Product: preprotein translocase subunit SecD
• Protein accession: YP_267865
• Protein GI: 71282618
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.276034
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAAACA AATACCCTTT ATGGAAGACA CTAATGGTGG CAATGATTGT CGCTATAGGT 
GCGCTCTATG CCACACCAAT GCTATACGGC GAATCACCTG CAGTGCAAGT TTCAGGCTTA 
CGCGGTGTTG AAGCAAATGC TGCTACGCTT GATAGTATCA AAGCACAATT AGAAGAAAGT 
AACCTAAGCT TTGCTAGTAT TGCTTTAGAG AATGGACAAG TATTAACACG TTTTAATAAT 
ACTGAAGATC AACTTAAAGC GCGTGATGTA TTAGATGATA ATTTAGGTAA ACAGTTTTCA 
GTTGCTTTAA ATTTAACGCC TAATACTCCA AGCTGGCTAG CAGCAATTGG CGGAAAGCCA 
ATGAAGTTAG GTTTAGATTT AAGTGGTGGT GTTAGCTTCT TGATGGAAGT GAACATGAAA 
GAGGCCATCA ATAAAGCTAA AATAGGTATG GTGAGTGATT TTCGCGGTGA TTTACGCAAT 
GAAAAAATTC GCTACCGCAG TGTTAAAGAA GTTAATAATT CTGTAGTCGT TGTTTTTAGA 
AAAATTGAAG ACTTAGAAGC GGGACAATCA TTACTGAAAC AGCGTTACCG TGATTTGCTG 
CTAAGTACTG ATGACGATAC GCTAACGCTA ACAGCAAAAA TGACGGAGCC AAAGCTTAAA 
GAAATTCGTG AATATGCTTT ACAGCAAAAC ATCACTATTA TTCGAAATCG TGTCAATGAG 
TTAGGGGTTG CCGAGCCGCT TGTTCAACGC CAAGGCAAAA AACACATCGT TATCGAATTA 
CCAGGTGTTC AAGACACTGC CAAAGCGAAA GAAATCCTTA ATGCTACCGC AACCATTGAA 
TTTAGATTAG TCGATACCGA AGGTGACTTG TCTAATGCAT TAAATGGTCG TATTCCAGCA 
AACTCTATTT TGTTAACAGA TAAAGACGGT AGACCAAGCT TATTGAAAAA ACGCATCATG 
TTAACCGGTG ATCACATCAC TGATGCTAAA TCAGGCTTTG ATGAGTACTC TCGACCACAA 
GTGAATATTT CACTTGATAG TGCTGGAGGC TCTAAAATGT CTAGTGGTAC CAAAAGTAAT 
ATTGGTAAAC CAATGGCAAC GGTATTTATT GAATATAAAG CGACTGACAA AAAAGATGCT 
GAAGGCAACA TCATTTTTGA AAAACAACAA GAAATCATCT CTGTTGCAAC TATTCAATCA 
CGTTTAGGTA AAACCTTCCG TATTACTGGA GCAGGTAGTG CTGCTGAAGC GCATAACCTA 
GCATTATTAT TACGTGCAGG GGCTTTGATT GCACCAATCA CCATCGTAGA AGAGCGAACT 
GTAGGGCCTA CATTAGGAGC TGAAAACGTA AGACTTGGTT TCGAAGCTAT CTTAATGGGC 
TTTGGTTTAG TGTTTATCTT TATGATGATT TATTACCGTG CCTTTGGTGT GGTGGCTAAC 
CTTGCTCTAG GTGCAAACTT AGTGTTGATT GTTGGTGTTA TGTCGATGAT TCCTGGCGCT 
ACTTTAACAT TACCGGGTAT GGCTGGTATC GTATTAACAG TTGGTATGGC GGTCGATGCT 
AACGTGCTTA TTTTTGAACG TATTCGTGAA GAAATACGTG AAGGTAAAAC GATTCAACAA 
TCAATTCATC AAGGTTATGA TGCAGCATTT TCAACGATTA TTGATGCCAA CATCACTACC 
TTAATTGCAG CGTTAATTCT GTTTGCAATT GGTACTGGAC CTGTGAAAGG TTTTGCCGTG 
ACGTTATCTA TTGGTATTAT TACTTCAATG TTTACCTCGG TTGTTGGTAC TCGTGCCGTA 
GTTAACGCTA TTTGGGGCGG TAAACGCCTT GAAAAGCTTC CGATATAA 

 

Protein sequence

MLNKYPLWKT LMVAMIVAIG ALYATPMLYG ESPAVQVSGL RGVEANAATL DSIKAQLEES 
NLSFASIALE NGQVLTRFNN TEDQLKARDV LDDNLGKQFS VALNLTPNTP SWLAAIGGKP 
MKLGLDLSGG VSFLMEVNMK EAINKAKIGM VSDFRGDLRN EKIRYRSVKE VNNSVVVVFR 
KIEDLEAGQS LLKQRYRDLL LSTDDDTLTL TAKMTEPKLK EIREYALQQN ITIIRNRVNE 
LGVAEPLVQR QGKKHIVIEL PGVQDTAKAK EILNATATIE FRLVDTEGDL SNALNGRIPA 
NSILLTDKDG RPSLLKKRIM LTGDHITDAK SGFDEYSRPQ VNISLDSAGG SKMSSGTKSN 
IGKPMATVFI EYKATDKKDA EGNIIFEKQQ EIISVATIQS RLGKTFRITG AGSAAEAHNL 
ALLLRAGALI APITIVEERT VGPTLGAENV RLGFEAILMG FGLVFIFMMI YYRAFGVVAN 
LALGANLVLI VGVMSMIPGA TLTLPGMAGI VLTVGMAVDA NVLIFERIRE EIREGKTIQQ 
SIHQGYDAAF STIIDANITT LIAALILFAI GTGPVKGFAV TLSIGIITSM FTSVVGTRAV 
VNAIWGGKRL EKLPI