Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1086 |
Symbol | apbE |
ID | 3518381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1106014 |
End bp | 1107045 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637283550 |
Product | thiamin biosynthesis lipoprotein ApbE |
Protein accession | YP_267830 |
Protein GI | 71278788 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACAC TTAAACTACT GTTGTTGACC ACTTTGGTGT TAACGCTGTC TGCTTGCTTC CCGAGCAACC CTTCAAAAAA TACTGAGATA TTGCTGCAAG GGCATACCAT GGGGACTACG TATAATATTA AAGTAGTCGC GACAAAAGAA CAGTTGATAG AGCTTAAGTT ACAACAGCAA ATTGATGCAG CGCTGGAACA AGTTAATCAA GAAATGTCTA CTTATATTCC TGATTCTGAG TTATCGAAAT TTAACCAATC CACATCAACT GCAGCTATCG AAGTTTCACC AGGTTTTGCT CGTGTTCTTA AAGAATCTAT TCGTCTTGGT CAATTAAGTG AAGGTAAGCT TGATGTTACT GTCGGACCCT TAGTTAACTT GTGGGGCTTT GGCCCAGAAC AGCGTCCTGA AACTGTTCCT AGCGATGAGA TATTAGCGGC GACTAAAAAG CGTATCGGTC TACAAAACAT AACGCTAGAG GGTAATCTTC TCTCTAAAAA AATACCAGAC TTGTATATTG ATTTATCTAC TATCGCTAAA GGCTATGGCG TCGATGTTGT TGCCGAGCTA ATTGAAAGTA ATGGATTTAC TCACTACTTA GTTGAAATTG GCGGAGAAAT GCGATTAAGG GGCTTTAAAC ACACAGGTGA ACTGTGGGCT ATTGCAATCG AAAGACCTAT CCTTGATCAA AGTGGTGAAG AGCGTGCGGT ACATCAAGTC GTTATTCCCA AAGACAATGC GGTAGCTACC TCTGGTGATT ACCGTAATTA TTTTGAAGCG GATGGCAGAC GTTTTTCACA TATTATTGAT CCAGAAACGG GCAAACCTAT CGATCATAAC TTAGTATCCG TAACCGTGAT TCATCCTTCG TCTATGACGG CTGATGGCTT ATCAACTACC TTGATGGTAA TGGGCATGGA AAAGGGAATG GCTTTTGCTA GCGAAAATAA CTTGGCAGCA TTATTTATTT CTAAGACTGA AAATGGCTTT GACGAACGAT TTACGGTAAA ATTCAAACAG TATTTGAAAT AA
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Protein sequence | MNTLKLLLLT TLVLTLSACF PSNPSKNTEI LLQGHTMGTT YNIKVVATKE QLIELKLQQQ IDAALEQVNQ EMSTYIPDSE LSKFNQSTST AAIEVSPGFA RVLKESIRLG QLSEGKLDVT VGPLVNLWGF GPEQRPETVP SDEILAATKK RIGLQNITLE GNLLSKKIPD LYIDLSTIAK GYGVDVVAEL IESNGFTHYL VEIGGEMRLR GFKHTGELWA IAIERPILDQ SGEERAVHQV VIPKDNAVAT SGDYRNYFEA DGRRFSHIID PETGKPIDHN LVSVTVIHPS SMTADGLSTT LMVMGMEKGM AFASENNLAA LFISKTENGF DERFTVKFKQ YLK
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