Gene CPS_1086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1086 
SymbolapbE 
ID3518381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1106014 
End bp1107045 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content40% 
IMG OID637283550 
Productthiamin biosynthesis lipoprotein ApbE 
Protein accessionYP_267830 
Protein GI71278788 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACAC TTAAACTACT GTTGTTGACC ACTTTGGTGT TAACGCTGTC TGCTTGCTTC 
CCGAGCAACC CTTCAAAAAA TACTGAGATA TTGCTGCAAG GGCATACCAT GGGGACTACG
TATAATATTA AAGTAGTCGC GACAAAAGAA CAGTTGATAG AGCTTAAGTT ACAACAGCAA
ATTGATGCAG CGCTGGAACA AGTTAATCAA GAAATGTCTA CTTATATTCC TGATTCTGAG
TTATCGAAAT TTAACCAATC CACATCAACT GCAGCTATCG AAGTTTCACC AGGTTTTGCT
CGTGTTCTTA AAGAATCTAT TCGTCTTGGT CAATTAAGTG AAGGTAAGCT TGATGTTACT
GTCGGACCCT TAGTTAACTT GTGGGGCTTT GGCCCAGAAC AGCGTCCTGA AACTGTTCCT
AGCGATGAGA TATTAGCGGC GACTAAAAAG CGTATCGGTC TACAAAACAT AACGCTAGAG
GGTAATCTTC TCTCTAAAAA AATACCAGAC TTGTATATTG ATTTATCTAC TATCGCTAAA
GGCTATGGCG TCGATGTTGT TGCCGAGCTA ATTGAAAGTA ATGGATTTAC TCACTACTTA
GTTGAAATTG GCGGAGAAAT GCGATTAAGG GGCTTTAAAC ACACAGGTGA ACTGTGGGCT
ATTGCAATCG AAAGACCTAT CCTTGATCAA AGTGGTGAAG AGCGTGCGGT ACATCAAGTC
GTTATTCCCA AAGACAATGC GGTAGCTACC TCTGGTGATT ACCGTAATTA TTTTGAAGCG
GATGGCAGAC GTTTTTCACA TATTATTGAT CCAGAAACGG GCAAACCTAT CGATCATAAC
TTAGTATCCG TAACCGTGAT TCATCCTTCG TCTATGACGG CTGATGGCTT ATCAACTACC
TTGATGGTAA TGGGCATGGA AAAGGGAATG GCTTTTGCTA GCGAAAATAA CTTGGCAGCA
TTATTTATTT CTAAGACTGA AAATGGCTTT GACGAACGAT TTACGGTAAA ATTCAAACAG
TATTTGAAAT AA
 
Protein sequence
MNTLKLLLLT TLVLTLSACF PSNPSKNTEI LLQGHTMGTT YNIKVVATKE QLIELKLQQQ 
IDAALEQVNQ EMSTYIPDSE LSKFNQSTST AAIEVSPGFA RVLKESIRLG QLSEGKLDVT
VGPLVNLWGF GPEQRPETVP SDEILAATKK RIGLQNITLE GNLLSKKIPD LYIDLSTIAK
GYGVDVVAEL IESNGFTHYL VEIGGEMRLR GFKHTGELWA IAIERPILDQ SGEERAVHQV
VIPKDNAVAT SGDYRNYFEA DGRRFSHIID PETGKPIDHN LVSVTVIHPS SMTADGLSTT
LMVMGMEKGM AFASENNLAA LFISKTENGF DERFTVKFKQ YLK