| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0996 |
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| Symbol | |
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| ID | 3521917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1013833 |
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| End bp | 1016829 |
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| Gene Length | 2997 bp |
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| Protein Length | 998 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637283461 |
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| Product | alpha amylase family protein |
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| Protein accession | YP_267745 |
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| Protein GI | 71281445 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02103] alpha-1,6-glucosidases, pullulanase-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.621113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAC CTTCTTTCTT TCACTCTATT TCAAGCCTTA ACCGTGCAGT TTATATTGCG
CTTTCTGCCA GTTTATTAGT TAGTGCTTGT GGGGAAACAA GTAAATCGAC TCAATCTTCT
CAGTTAGATA ATCAAGGCGT TGATATCGCG GCCAAAAGCA AAACTATTAC GGCAAGTGCC
TTTAAAGTAA GCGACTTAGA TAACTTACCT AGTGATAGCT CGGCTCATTG GTTAAGCACC
AATATATTGG TACTGCCCAA ATCAGTTAAT AAATTTCAAT ACCAACTATT AAGCAAAAAT
TCAGTCGGTT TTAGTAGCAT TGATTTAATG CCCGTTAATT TTCCTGAAAA ACTGGCTACA
AAGTTTCCAC ATTTAGCTGA CTTTCAAGCA TTTGAACTGC AATTAACACC AGATCAAAGC
AAGCGTTGGT TAAAACAACA AGTTATGGTG GTTGCCATCG ATGCGACTAT TGATACAACC
GTTGAACCTG CCCTTAAAAC AAGTAAGCAA GCCAAAGAAG TTGCTTATGT GCAAATCGGC
GGCGTTATTG ATGCACTTTA TACTCAGGGC AAAAATGACG CTGATGAAGT GACTGATTTA
GGCGCAACAA TTATTAGCAA CCAAGAAGTC GAGGGTGTCA GCACTGCTGT TAGTTTTAAG
TTATGGGCAC CAACAGCACA AGCTGTTTCT ATACAGCTTT TTGATGATAA CTTACAAGCT
CTGTCAGATG GTAAGCTTGA GATGGTAGAA GATAGCAGTA CGGGAGTTTG GCAGGTATTG
TCAGATAGCC AAGCGAGTTA CGCTTATTAT AAGTATCAAG TTAATGTTTA TCATCCTGCA
TCAAAAAAAA TTGAATCCTT ATCCGTTACT GACCCCTATT CCTTAAGCTT GTCTGTTAAT
AGTGAGTATT CACAGGTTGT TGATTTAAAT GACGCCGTTA CTCAACCAAA AGACTGGCTT
ACTCAGCAAA TACCTACCGT GAAAAATGTC GAAGATAATG TTTTTTATGA AACCCATATC
CGTGACTTTA GTGCTAACGA ACAGCAACTT AGTGACTCTG GCTTTAAAGG CAAATACAAA
GCCTTTAGCG AGAAAAACTC TGATGGCATT CAACATTTAA AAGCGCTGCA AATTGCAGGA
TTAAATAACA TTCATTTATT ACCTACTTTT GATATAGCGA CGGTCAATGA AGATGACAGT
AAACACCTTG ATATAGATGA TAGTTTGGGT AAAGTTTGTG CCATTACAAA AAATATCAGC
CTATGTCAGC AACCTTACGA TGAAAAACAG TCAATAAAGT CATTATTACA GAGCTATGAG
GTTGCAGGAG AGCAAACACA GCAATTGGTG AGCGAGTTAC GTGAAGTCGA TAACTACAAT
TGGGGTTACG ATCCTTTTCA TTATACTGTG CCAGAAGGTA GTTATGCTGT TGATGCTAAA
GGTGTATCAC GCTTAGTTGA ATTTAGAGAA ATGGTTCAAA GCCTACATGC TATGGGTTTC
AGGGTGATTA TGGATGTAGT TTATAACCAC ACTCACCAAG CAGGATTAGA GCCTAATTCA
GTATTAGATA AAATTGTGCC CACCTATTAC CACCGTCTGG ATCCATTAAC TGGGGACATT
GAGCAATCGA CTTGTTGTGA TAATACCGCG ACAGAGCGTG TAATGATGGC AAAACTAATG
ACAGATTCAT TAGTTGTCTG GGCTCGTGAT TATAAAATTG ATGGTTTTCG CTTCGATTTA
ATGGGACATC AGCCAAAAGA TGCAATGTTG ACTGCCAGAG AAGCAGTGCG CCTAGTAGAC
AATGATACTT ACTTTTACGG TGAAGGCTGG AACTTTGGTG AAGTAGCGAG TAATAGTCAA
TTTATTCAAG CCAGTCAGTT AGAACTAGGT GGTAGCGAAA TAGGGACTTT TTCAGATAGA
TTGCGTGATG CTGTTCGTGG TGGCGGCAAT AATACCCGAG ACTCCCAGGG CGTAGGTAAT
GGTCTGTTAA CCTTTCCCAA TAATAAACAG CCAAATGAAA GCCAAGACCA AACAATGATT
CAGGCTGACT ATGCCTTACG TATGGACCAG TTGCGAATTG GCTTAGCAGG GAATTTAATT
AACTTTCCTT TAAGAACTCT CAAAGGTGAA AGTAATGGCG AAAAAGTATT AGGCAAAGAT
ATCCCTTATG GCGATCAGCC AACAGGTTAT GCCTTAGATC CCGCAGATAC CATCAACTAT
GTTTCCAAGC ATGATAATCA AACACTTTGG GATAACAGCC AATACCGCTT ACCATTTGAT
GTGTCAACAG AAGATAGAGT GAGAATGCAT CTACAAAGTT TGTCTTTCGC TTTATTCGCT
CAAGGTATCC CTTTTATTCA CATGGGCTCA GAGTTTATGC GCTCTAAGTC ATTTCTTAGA
GACAGTTATG ACTATGGTGA CTGGTTCAAT CGAGTTGATT TTTCCAAGCA GGATAACTTC
TACAATGTTG GGCTACCACC AGCTGAAAAA GATAAAGACA ACTGGCCGTT AATAAAAGAA
GTACTTGCCG GGCACCAAGG TCGTGATCAG GTCAACGCTG AGCAAATTCA GCGAAGCAGT
AATGCATTTA TCGATATGTT GGCAATTCGT ATGAGTAGTC CATTATTTAG GTTGACCACC
GAACAGAGCA TTATTGATAA AGTAAGTTTT CTTAATGCTG GGGCATTAAA GCAAGGCGGC
AGTATCTCAG CGCAGCAAAC TGGCTTATTA GTGATGAAAA TCGATGATAC GCAAGGTGAA
GCTGTAGACA GTAAATATCA AAGTTTACTG GTTATCTTTA ATATCAGTGA TAAAACACAG
ACATTTAACT ATAACTTTAA AGAGGACTTT GATTCTACTA GCACTCACGG ATATCAATTA
CACCCGATCC AGAAAAGGGG AAGTGATGAA GTGGTTAAAC AAAGTAAAGT AACGGTAAAA
GGTTTTATTG TTCCGCCATT ATCCAGCGTA GTATTTGTAA AACCTGACAG TAAATAA
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| Protein sequence | MKTPSFFHSI SSLNRAVYIA LSASLLVSAC GETSKSTQSS QLDNQGVDIA AKSKTITASA
FKVSDLDNLP SDSSAHWLST NILVLPKSVN KFQYQLLSKN SVGFSSIDLM PVNFPEKLAT
KFPHLADFQA FELQLTPDQS KRWLKQQVMV VAIDATIDTT VEPALKTSKQ AKEVAYVQIG
GVIDALYTQG KNDADEVTDL GATIISNQEV EGVSTAVSFK LWAPTAQAVS IQLFDDNLQA
LSDGKLEMVE DSSTGVWQVL SDSQASYAYY KYQVNVYHPA SKKIESLSVT DPYSLSLSVN
SEYSQVVDLN DAVTQPKDWL TQQIPTVKNV EDNVFYETHI RDFSANEQQL SDSGFKGKYK
AFSEKNSDGI QHLKALQIAG LNNIHLLPTF DIATVNEDDS KHLDIDDSLG KVCAITKNIS
LCQQPYDEKQ SIKSLLQSYE VAGEQTQQLV SELREVDNYN WGYDPFHYTV PEGSYAVDAK
GVSRLVEFRE MVQSLHAMGF RVIMDVVYNH THQAGLEPNS VLDKIVPTYY HRLDPLTGDI
EQSTCCDNTA TERVMMAKLM TDSLVVWARD YKIDGFRFDL MGHQPKDAML TAREAVRLVD
NDTYFYGEGW NFGEVASNSQ FIQASQLELG GSEIGTFSDR LRDAVRGGGN NTRDSQGVGN
GLLTFPNNKQ PNESQDQTMI QADYALRMDQ LRIGLAGNLI NFPLRTLKGE SNGEKVLGKD
IPYGDQPTGY ALDPADTINY VSKHDNQTLW DNSQYRLPFD VSTEDRVRMH LQSLSFALFA
QGIPFIHMGS EFMRSKSFLR DSYDYGDWFN RVDFSKQDNF YNVGLPPAEK DKDNWPLIKE
VLAGHQGRDQ VNAEQIQRSS NAFIDMLAIR MSSPLFRLTT EQSIIDKVSF LNAGALKQGG
SISAQQTGLL VMKIDDTQGE AVDSKYQSLL VIFNISDKTQ TFNYNFKEDF DSTSTHGYQL
HPIQKRGSDE VVKQSKVTVK GFIVPPLSSV VFVKPDSK
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