Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0986 |
Symbol | |
ID | 3521172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 998514 |
End bp | 1000694 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637283451 |
Product | major facilitator family transporter |
Protein accession | YP_267735 |
Protein GI | 71280703 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.776393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATAACGA CCCTCAAACC TTTTATCCTA TTACTAACAA GTGGCTTTTT GTTAATGTTA GGTTATGGAT TAAGCAACAT TTTACTACCT GTGCGTATGC AGAGCGATGG GGTGAGCCTG GATAATATGG GCTTAGTACT GTCTATGTTG TCTGTGGGTT TTTTGCTGGG TGCATATTAT AGCCGTATCT TATTACAACG TGCTGGTCAT ATAAGAATAT TTGCCATGTG CGGTAGTTTA ACCTCTGTGG CGATTTTACT TTCAGGCCTT TACCCCGAGC CTTTAATACT CGCGGGGATG AGGATAGTTA CGGGGTTTTG TATTGCTTGC ACCAATGCCA CTCTTGATAG TTGGTTAAGT CATAGCGCCA CTGAAAAAAA TAGGGGACGT ATACTCTCCA TTAATCAGAT GATGATAATG ACAGCCCTAT TTTCTGGCCA ATTTTTATTA AATGTCGCGC CGATTAATGA TATTACCCTG TTTGTTATCT GTGGCATTTT ATTTAGTTTA TCCATTACAC CCATCGTTAT TAGCAGACAA CAAGGTCCAC AAATTGAAGA TAGCCCATCA ATGTCTTTAA TAACTGTGTT CAAACTGTCT CCTTTGGGTG TGGTAAGTAG TTTTTATTGT GGCATTTTGT ATGCTGGTTT AATGAATATG TTGCCTATTT TTGCCAGTAA CAACGGTATT ACAGATTTAG ATTTATCCAT ATTTATGGGA TCAGCAATCT CTGGGGCAAT TATTTTACAG TTCCCTATTG CCTATTTATC GGATAACTTT GACCGCCGAA AAGTCATGCT ATTTATGGTA GCGACACTCA TTGTACTGTG CTTATCTGTG CCATTACTTA TGTCCGAAGA TATGTTCAAA CTAACCTTAT TTGCTATTGC GCTAATCACT GGTTTGGTTG CCTGTCTTTA CCCAATGAGT ATGTCTGAAA CATTTGATAC CGTCTTAAAA GAACAAATTT TGGCAGCAAT GAGTTCGCTA TTATTAATCT ATGCCTTAGG CAGTATTTTA GGTCCTTACC TTGCTTCTGT AGTGATGAAT TCCTTCGGTA GCAGCGCGCT GTTTAGCTTT ATGAATGTAG TCGCCTTAAC TCTGTTACTT TTTATCGGTA TTCGTATGAA GCTACAGCAA GCTTTACCAC TTGATGAGCA AGAAAGCTTT ATCATGCAAA CACCCAGTGG CGTAGTATCA GAGCTCGATC CTCGTACACA ATATGCAGAA GCACAATTCG AATCAACTCC GGAAGTGGAA GTTGCTATTA GCTTGGCGAA TAAAAACCCA TCGGCTGCGG TTAATATGGT TAAAGCAATT GTGCAAAGAG ATCCAAAAAA TGCGTCAAAC TTAGCCGCGG CATTAAGTAC TATAGAGGCG ATAGACATTG GGAAATTATA TGCCGCAATA ACATCAGCAG CTCCACAAAT GAGCATTCAC ATTGCTGAAG CATTAACCAA TGCATCCCCT GAACAAGCGG ATCAACTTGT TGATTGGATC ACCTCTGAGT ATCCCGATCA ATTTACTAAC ATTGTTGTCG CAATTGCTAA TGCAATGCCT GATAACGGTA TTGATTTAAT GGAATTAGCC GCTGAGAACA TGGCCGAAGA ATACCCTAGT GAGTTGCTAG AAATGACTGA AGAATATATG ACAAACCTAT CGGATTCTTT AGATGCAATG CGTCCAGTCG ATAGGGTCGC TGCGGCCTGT GAAAATACGG CAACAGAGCT TTACAATCGT TTATCCGATG TATCTCCTGA ACAGTCTGCA GAGCTTGCCT TCACGGTATC AGAATCTCTG CCTGAGTCGT CAAACGATGT TGCTGAAGCC TATGTTCAAA ACTTAATTGA TAGTGAAAGC GAAGGCGAAA ATGAAAATAC CAATGAAAAC GAGCAAGTTT TCTCAGAAGA TGCATTAGAA AATATCGAGA ATGCAGCTAA TAACTATATT AATCATATGG TTGACAACAT CCCTGAGCAT GCAGTAGATG TCGCGAGTAC ATTCGTTGAT TCTTTTCCCG AAGTTGCTTC GGATATGCTC GAAATACTGC AAGACTCGGA TGACATCGAA GACAGCGAGT TAAGTATTTC TATTGATGAT AAGCCGTTAC AGAGTATTGT AGAGCAGCAA TTACAAGAAG CCGTACAGAC TCAGTCTGAT GATATTGAAC AAAAAAATTA A
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Protein sequence | MITTLKPFIL LLTSGFLLML GYGLSNILLP VRMQSDGVSL DNMGLVLSML SVGFLLGAYY SRILLQRAGH IRIFAMCGSL TSVAILLSGL YPEPLILAGM RIVTGFCIAC TNATLDSWLS HSATEKNRGR ILSINQMMIM TALFSGQFLL NVAPINDITL FVICGILFSL SITPIVISRQ QGPQIEDSPS MSLITVFKLS PLGVVSSFYC GILYAGLMNM LPIFASNNGI TDLDLSIFMG SAISGAIILQ FPIAYLSDNF DRRKVMLFMV ATLIVLCLSV PLLMSEDMFK LTLFAIALIT GLVACLYPMS MSETFDTVLK EQILAAMSSL LLIYALGSIL GPYLASVVMN SFGSSALFSF MNVVALTLLL FIGIRMKLQQ ALPLDEQESF IMQTPSGVVS ELDPRTQYAE AQFESTPEVE VAISLANKNP SAAVNMVKAI VQRDPKNASN LAAALSTIEA IDIGKLYAAI TSAAPQMSIH IAEALTNASP EQADQLVDWI TSEYPDQFTN IVVAIANAMP DNGIDLMELA AENMAEEYPS ELLEMTEEYM TNLSDSLDAM RPVDRVAAAC ENTATELYNR LSDVSPEQSA ELAFTVSESL PESSNDVAEA YVQNLIDSES EGENENTNEN EQVFSEDALE NIENAANNYI NHMVDNIPEH AVDVASTFVD SFPEVASDML EILQDSDDIE DSELSISIDD KPLQSIVEQQ LQEAVQTQSD DIEQKN
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