Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0794 |
Symbol | |
ID | 3521351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 812543 |
End bp | 813229 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637283259 |
Product | sigma-70 family RNA polymerase sigma factor |
Protein accession | YP_267543 |
Protein GI | 71280882 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.078533 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAAAAC AACCTTCTGC TACCGTAAAT CAAGAGAAAG AAAGTGAACT TATTGAAGGG CTAATGAGCA ATGACGATTT AGCTTATGAG ACCTTAGTGC GTCAATACAG CGCAAAAATG TATGCCGTTG CACGTCGTTT CTTTTGCACG AATGACGATG CACAAGAGTG TTTGCAAAAA GCATTTATCC AAGTATTTAA AAATATCACC TCATTTAAAC AAAACTCAAA CCTGTCGACT TGGCTCCATC GTATTACGGT TAATGAAGCA TTAATGATGC TTCGACAAAG AAAGCGGCAA AACACCACCT CATTAGAAGA GTTTGCTCAA CACTACAACG AATATGGAGA GCGTACTGTT TTTGCTGATA ATTTAGGAAA TAACTTAAAC AATAACTTGG GTACTATCTT AGGGGGAAAT GTTGAAACGT TATTTGAAAA AACTGAAACA AAACTATCGC TTAATGATAT TATTTTTCAA CTTCCTGAGA AATATTGTAA CGTTTTACTG TTGAGGGACA TCCAAGAGAT AAGCACCAAG GAAACTGCCG AAATTTTAGC TATATCTGAA TCATTAGTGA AAACTCAATT ACACCGAGCT AGGTTATTGT TAAAGGCAAT TTTAGAGCAG GATGACAAAG ATAATCTAGA AAGTAATTGG AAGGTGAATT CACATGTTAA TGATTAA
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Protein sequence | MKKQPSATVN QEKESELIEG LMSNDDLAYE TLVRQYSAKM YAVARRFFCT NDDAQECLQK AFIQVFKNIT SFKQNSNLST WLHRITVNEA LMMLRQRKRQ NTTSLEEFAQ HYNEYGERTV FADNLGNNLN NNLGTILGGN VETLFEKTET KLSLNDIIFQ LPEKYCNVLL LRDIQEISTK ETAEILAISE SLVKTQLHRA RLLLKAILEQ DDKDNLESNW KVNSHVND
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