Gene CPS_0794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_0794 
Symbol 
ID3521351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp812543 
End bp813229 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content35% 
IMG OID637283259 
Productsigma-70 family RNA polymerase sigma factor 
Protein accessionYP_267543 
Protein GI71280882 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.078533 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAAAAC AACCTTCTGC TACCGTAAAT CAAGAGAAAG AAAGTGAACT TATTGAAGGG 
CTAATGAGCA ATGACGATTT AGCTTATGAG ACCTTAGTGC GTCAATACAG CGCAAAAATG
TATGCCGTTG CACGTCGTTT CTTTTGCACG AATGACGATG CACAAGAGTG TTTGCAAAAA
GCATTTATCC AAGTATTTAA AAATATCACC TCATTTAAAC AAAACTCAAA CCTGTCGACT
TGGCTCCATC GTATTACGGT TAATGAAGCA TTAATGATGC TTCGACAAAG AAAGCGGCAA
AACACCACCT CATTAGAAGA GTTTGCTCAA CACTACAACG AATATGGAGA GCGTACTGTT
TTTGCTGATA ATTTAGGAAA TAACTTAAAC AATAACTTGG GTACTATCTT AGGGGGAAAT
GTTGAAACGT TATTTGAAAA AACTGAAACA AAACTATCGC TTAATGATAT TATTTTTCAA
CTTCCTGAGA AATATTGTAA CGTTTTACTG TTGAGGGACA TCCAAGAGAT AAGCACCAAG
GAAACTGCCG AAATTTTAGC TATATCTGAA TCATTAGTGA AAACTCAATT ACACCGAGCT
AGGTTATTGT TAAAGGCAAT TTTAGAGCAG GATGACAAAG ATAATCTAGA AAGTAATTGG
AAGGTGAATT CACATGTTAA TGATTAA
 
Protein sequence
MKKQPSATVN QEKESELIEG LMSNDDLAYE TLVRQYSAKM YAVARRFFCT NDDAQECLQK 
AFIQVFKNIT SFKQNSNLST WLHRITVNEA LMMLRQRKRQ NTTSLEEFAQ HYNEYGERTV
FADNLGNNLN NNLGTILGGN VETLFEKTET KLSLNDIIFQ LPEKYCNVLL LRDIQEISTK
ETAEILAISE SLVKTQLHRA RLLLKAILEQ DDKDNLESNW KVNSHVND