Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0448 |
Symbol | hemE |
ID | 3521815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 445407 |
End bp | 446474 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637282913 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_267206 |
Protein GI | 71281343 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACAGAAT TAAAAAATGA TACCTATTTA CGTGCGCTAT TAAAGCAACC AGTAGATTAC ACGCCGGTAT GGATGATGCG TCAAGCGGGT CGTTATTTAC CAGAGTATCG TGAAGTACGT AAAAATGCCG GTGACTTTAT GTCGGTATGT AAAAATGCTG AATTGGCTTG CGAAGTAACT ATTCAACCAT TACGTCGTTT CCCATTAGAT GCTGCGATTT TGTTTAGTGA TATTTTAACT ATTCCTGATG CTATGGGTTT AGGTTTATAT TTTGAAACAG GTGAGGGACC AAAATTTGAA CGTCCTATTA CATGTAAAGC GGATGTTGAT AAAATTGCCG TACCTGATCC AGAAGATGAA TTAGGTTATG TAATGAATGC CGTGCGTACT ATTCGCAAAG AACTAAAAGG CGAAGTACCG CTGATTGGTT TTTCAGGTAG CCCTTGGACA TTAGCAACCT ACATGATTGA AGGTGGTAGT TCTAAAGCTT TCACTAAAAT TAAAAAGATG ATGTTTGCTG AGCCACAAAC CTTACATTTG TTACTTGATA AGTTGGCTGA CTCAGTCATT AGTTATTTAA ATGCCCAAAT TGCTGCAGGC GCGCAATCTG TAATGGTATT TGATACTTGG GGCGGCGTAT TATCTCCACG TGATTATAAT GAGTTTTCAT TACAATATAT GGCGAAAATC GTTGATGGTT TAACGCGTCA TAATGAAGGT CGTCAAGTGC CAGTGACATT ATTCACTAAA AATGGCGGTA TGTGGTTAGA ATCTATCGCG GCAACTGGTT GTGATGCAGT TGGCCTAGAT TGGACCATTG ATATTGAAAA TGCAAAAGCA CGTGTTGGTG ATAAAGTTGC TCTACAAGGC AATATGGATC CATCAATGTT ATATGCACCA TTGCCACGTA TTGAACAAGA AGTTTCAAAA ATACTATCAG GCTTCGGTGA AGGTGGTACA GGTCACGTAT TTAACTTAGG CCATGGTATA CATCCAGATG TGAATCCTGA TCATGCAGGT CACTTCATTG AATCAGTACA CCGTTTAAGT AAGCCTTATC ATAAATAA
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Protein sequence | MTELKNDTYL RALLKQPVDY TPVWMMRQAG RYLPEYREVR KNAGDFMSVC KNAELACEVT IQPLRRFPLD AAILFSDILT IPDAMGLGLY FETGEGPKFE RPITCKADVD KIAVPDPEDE LGYVMNAVRT IRKELKGEVP LIGFSGSPWT LATYMIEGGS SKAFTKIKKM MFAEPQTLHL LLDKLADSVI SYLNAQIAAG AQSVMVFDTW GGVLSPRDYN EFSLQYMAKI VDGLTRHNEG RQVPVTLFTK NGGMWLESIA ATGCDAVGLD WTIDIENAKA RVGDKVALQG NMDPSMLYAP LPRIEQEVSK ILSGFGEGGT GHVFNLGHGI HPDVNPDHAG HFIESVHRLS KPYHK
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