| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0310 |
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| Symbol | |
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| ID | 3518537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 319256 |
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| End bp | 321934 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637282775 |
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| Product | TPR domain-containing protein |
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| Protein accession | YP_267076 |
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| Protein GI | 71278865 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGT ATATAAAACC TTCAGCCATA CTATTAACGT TAATCTTAAG TGCGTGTAGT
GAAACAAAAA CAGTACAGCA ATTGATCAGT AGTGGTAACA GCTTTGTTCA AGTTAGGGAT
TTTTCTAGTG CTGTAATAGA ATTTAAAAAT GCGGTCCGTC TAGAACCTAA AAATGCTAAT
GCTCGCTTTG AACTAGGAAA TGCTTATTTA GAGCAAGGTA ATTTTGTTAA TGCAGAAAAA
GAATTTTCTC GGGCCGTAGA ATTAGGCCTA GATTTTTCTA ATATCGCTGC ACTTATGGCA
AGAGTAAACA CTCATTTAGA TAAAGCGGAT GAGGTTTATC AGTTAGTTGA ACGTAGTGAT
GAATTGACGG ATGATGATTA TGTTGAGGTA TTAACTTATG CAGGTATTAC TGCATTAAAA
CAGAACCGAA TCTCTCAAGG GCAAGATTAT TTAACACAAG CGATAGTAAT TAATCCAGAT
GCTGCTTATA GCCGGATAGC ACAAGCTTAT GTTCATTATG CGGATCGAGA GTTTTCTCAA
GGTATAGTCG TTATTAGTAA TTTACTTAAT GAGAAAACTG ATGCTACAGA AGCAATGTTG
ATACAAGGAC ATTTGTATTA TGCACAGCAA GAATTTGAGC ATGCCAGTGG GGCTTTTGCG
CTTTATCTTA ATTATCATCC ACAAGATCAT AAAATACGTT TTTTCGAAGT AAATAGTCTA
ATTAAAGCCG AAAAGTTTGA ACAAGCAAAT GTAATCACAA ATACCTTATT AAAAGCATTT
AAAGACTCTT CCTTAGCATT ACAATTTAAA GCACAACTCG AATATCAAAA GAAAAATTAT
AGTGCAGCAA GAGATTATGC CGAAGAAGCA TTACAGCATG GTCAAGACTT TTTAGGAGCT
AAAATTATTG CAGGGGTTAG TTCATATTTT TTAGGGGACG TAGAACAAGC ATATACCAAG
TTAAATGGCA TTGTTGAACG AGTGCCTAAT AACCTCTTAG TTAAAAAAAT CCTTGCAGTA
ACTAAGTTTG AGCTAGGGTA TTACGCCGAT GCAGCCGAAA ATTTTTCATC TCTTGAGGGG
CTTACCTCTG CGGATCTACA ACTATTGAAA AGTTCAAGTG CAAGTTTAAT GGGGATTGGT
TATGTGGATA ATGCATTGTC CTTAATAAAT AAAGCGGAAG AATTTTCTCC AGATAATGCA
CAGGTAGCGG CGCAAAAAGG CCTTATGCTC TTATCCCAAA ATGATATTAG TGGCATTAAT
TCGATGAAGC GTGCTGTTGA GCTTGACCCT TCACTCACTT ATGTCCAAGT GGCATTAGCT
ATAGGGTATC TAAATATAGG TGAAGAAAAT AAAGCTCAAA AAATAGCGGA TTTATATAAA
GATAAGATTG ACGAGGCAGA TGTAGGACAT GTGTTGGAAG GCTTCATTTA TTTGAATAAC
AAACAAAGTG CTAATGCGCA AGTCAGTTTT GAAAAAGCAC TTTCATTAAA TCCTAAAAAT
ATTGCCAGTT TGTATAACCT AGGTTTACTC CATAAAAGGG CTGCAGAAAA TTCAAAAGCA
ATTATCTACT TTGATCGACT TATAGCATTA TCTCCTGAGC ATAAGGGAGC TTTAAAATCA
TTAGTCTCTA TAGCTGTAAA TAAAGAATAT TTAGAAGAAG TTCTTACTAT TCTAGTTAGG
AATCATCAGA CCGATAACCT CTATAGCATA ATCGCACTAG CACAAGTTTT AAGAATAGAT
CAGCAAGTTG CTAAAGCAGT TACAACATTA GGGGGGATTG ATAAATCTGT TAAGTTAACA
TCAAATTATT TTATGTTGTT GGGTGATAGT TATTTAGAGT TAGAAAAGTA TCTAAAAGCT
AATGCAATCT TTGAGCAAGG TTTAGCCCTT GAACCTAAAG ATTACCTGTT GAATATTAGA
TATATTAGTA CATTAGAGTG GCTAGGTGAT TATACTGCAG CTCTGGATCA AACAAGGAGA
CTGCATAAGT ATTATCCTAA CAATATAAAT ATCACCACGT CGCTAATTTA TCTTGAGGTG
AGAAATAAAA ACTATCAAGA AGCAAAATAT TTATTAGAAG CTATAAAGGG CCAAAAAAGC
AATCATCATC AACTCGATGC TATTGCAGGT GAAATTTATA GTTATGAAAA GGATTACCCT
CAAGCAATTG AACATTTTTC TGTAGTTTAC GAAAAAGAAC CAACGGAGTT AAATTTACTC
AACTTAGCAC GAACATTAGG ATTTGATAAA CAAAATAAAC AGGCAGAGAG ACTATTAGAG
TTATATCTTG ATAAGAACCC CAACAATAGT AAAATTCGTT TTTTACTTGC AGAATTATAC
AACCCACAAG ATAGAAAGAA GAGGGTTGTT CAATACCAAG TTTTATCGAC ACAAATACCT
AATAATGCAA TCGTATTTAA TAATTTGGCA TGGAATCAAT TCAAATTAAA GCAAACTGCT
GAAGCACTTA TAAATATAGA GAAGGCATAC CAATTACAAC CTGATAGTTT AGCAATCCAA
GAATCTTACG GTGTTATTCT CATAGCAAAT AACAAATTAA GCCAAGGAAT TAATATACTC
GAAAGCGCTA TTTTGTCTGG TTCAACTGAT GCTGCAGCAA AGGAGTATTT GATTAAAGCT
AAGACTTTAC TCAATAATCA AGGTAAGTCT AGTGGCTAG
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| Protein sequence | MKKYIKPSAI LLTLILSACS ETKTVQQLIS SGNSFVQVRD FSSAVIEFKN AVRLEPKNAN
ARFELGNAYL EQGNFVNAEK EFSRAVELGL DFSNIAALMA RVNTHLDKAD EVYQLVERSD
ELTDDDYVEV LTYAGITALK QNRISQGQDY LTQAIVINPD AAYSRIAQAY VHYADREFSQ
GIVVISNLLN EKTDATEAML IQGHLYYAQQ EFEHASGAFA LYLNYHPQDH KIRFFEVNSL
IKAEKFEQAN VITNTLLKAF KDSSLALQFK AQLEYQKKNY SAARDYAEEA LQHGQDFLGA
KIIAGVSSYF LGDVEQAYTK LNGIVERVPN NLLVKKILAV TKFELGYYAD AAENFSSLEG
LTSADLQLLK SSSASLMGIG YVDNALSLIN KAEEFSPDNA QVAAQKGLML LSQNDISGIN
SMKRAVELDP SLTYVQVALA IGYLNIGEEN KAQKIADLYK DKIDEADVGH VLEGFIYLNN
KQSANAQVSF EKALSLNPKN IASLYNLGLL HKRAAENSKA IIYFDRLIAL SPEHKGALKS
LVSIAVNKEY LEEVLTILVR NHQTDNLYSI IALAQVLRID QQVAKAVTTL GGIDKSVKLT
SNYFMLLGDS YLELEKYLKA NAIFEQGLAL EPKDYLLNIR YISTLEWLGD YTAALDQTRR
LHKYYPNNIN ITTSLIYLEV RNKNYQEAKY LLEAIKGQKS NHHQLDAIAG EIYSYEKDYP
QAIEHFSVVY EKEPTELNLL NLARTLGFDK QNKQAERLLE LYLDKNPNNS KIRFLLAELY
NPQDRKKRVV QYQVLSTQIP NNAIVFNNLA WNQFKLKQTA EALINIEKAY QLQPDSLAIQ
ESYGVILIAN NKLSQGINIL ESAILSGSTD AAAKEYLIKA KTLLNNQGKS SG
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