Gene CPS_0179 details

Gene Information

• Locus tag: CPS_0179
• ID: 3520372
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 188462
• End bp: 189121
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637282646
• Product: LuxR family DNA-binding response regulator
• Protein accession: YP_266947
• Protein GI: 71279910
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCAGC CAGAAAAAAT AATAATAGCT GACGATCATC CCTTATTTAG ACAAGCTTTA 
TTAGGGACAT TAAAAGCTAA GCTAACTTAT ACGGTGTGGC TTGAAGCGCA AACAATTGAA 
GAGCTTGAGC AACAACTTAC TAACAATAAT GATAGTGACT TGCTGTTACT AGATTTAAAT 
ATTCCTGGCG CCCATGGCTT TAATACCCTA ATCCATGTAC GTAATCATTT TCCTCAAATT 
CCTGTTGTTA TCGTATCCGC TCATGAAGAT CATGACACCA TAAGCAAAGC AATGTCTTAT 
GGTGCTGCTG GTTTTGTACC AAAATCAACG CCTGTTGATG ACATTTATTC AGCTATTGTT 
GCGGTGTTAT CAGGAGATAC CTGGTTACCT GCTTCTTTTG AGCAAAAACA AAGAGATAAT 
AGTGATGGGG ACATTGCTGA ACGTGTTGCC AGTTTAACTC AGCAGCAATA TCGTATATTA 
ATGATGTTCG CTCAAGGCAT GTTAAACAAA CAAATTGCTT ATGATTTAAA TGTATCTGAG 
GCAACAATTA AAGCACATGC TACCGCTATT TTTAGAAAAT TAGACGTTCG TAATCGCACG 
CAAGCCGTTA TTGCGATCGC CCAACTAAGT TTAACTGAAA CTGGGTTTAA ACAGGGTTAA 

 

Protein sequence

MIQPEKIIIA DDHPLFRQAL LGTLKAKLTY TVWLEAQTIE ELEQQLTNNN DSDLLLLDLN 
IPGAHGFNTL IHVRNHFPQI PVVIVSAHED HDTISKAMSY GAAGFVPKST PVDDIYSAIV 
AVLSGDTWLP ASFEQKQRDN SDGDIAERVA SLTQQQYRIL MMFAQGMLNK QIAYDLNVSE 
ATIKAHATAI FRKLDVRNRT QAVIAIAQLS LTETGFKQG