| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0077 |
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| Symbol | dapF |
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| ID | 3518496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 79259 |
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| End bp | 80089 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637282544 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_266845 |
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| Protein GI | 71278746 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTAGTCA ATTTTTCTAA AATGCATGGT TTAGGTAATG ACTTTTTAGT GCTTGATAAT
GTCACACAAA ATGTTTTTTT ATCGCCAGAA CAAATCACTA AGTTTGCTAA CAGAAACTTC
GGTGTCGGCT TTGACCAACT ATTAGTGGTT GAGCCTCCTT ATGATCCAGA TTTAGATTTT
CATTACCGTA TTTATAATGC CGATGGTAGT GAAGTAGGAC AGTGTGGAAA TGGCGCTCGC
TGTTTCGCAA AGTTTGTCCG TATGAAAGGT TTATGCAATA AACATAAGAT AAAAGTTTCT
ACCAGCACAG GTAAAATGAA CTTACATATA GAGCGTGATG GTAATATTTC AGTCACTATG
CCGGTGCCAC AATTTGAACC AAAAAAAATC CCTTTTACTG CACAAAAAAC AGAAGGTACT
TATATTCTGC GTAGTGAAAG TGAAACGGTA TTATGTGGTG CTGTCTCAAT GGGTAACCCC
CATTGTGTAG TGACTGTCGA TAGTGTTGCA GAAGCTGATG TTGAATCACT CGGGAAAGAA
TTATCTGTAC ATGAGCGTTT CCCCGAAGAT GCTAATGTCG GTTTTATGGA AATTGTTAGC
CCTAATTATA TTAAATTAAG AGTGTATGAA CGTGGAGCAG CAGAAACGTT AGCATGTGGT
AGCGGTGCTT GTGCAGCCGT TGTTATTGGT TATATGCAGA AAAAACTAGC GAAACAAGTC
ACCGTAGAAC TGCCAGGTGG AAAATTACGA ATATTTTGGC AAGGACCGGG TCATCCAGTG
AAAATGTCTG GACCGGCAAC ACACGTATTT GATGGTCAAA TATCGATATA A
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| Protein sequence | MLVNFSKMHG LGNDFLVLDN VTQNVFLSPE QITKFANRNF GVGFDQLLVV EPPYDPDLDF
HYRIYNADGS EVGQCGNGAR CFAKFVRMKG LCNKHKIKVS TSTGKMNLHI ERDGNISVTM
PVPQFEPKKI PFTAQKTEGT YILRSESETV LCGAVSMGNP HCVVTVDSVA EADVESLGKE
LSVHERFPED ANVGFMEIVS PNYIKLRVYE RGAAETLACG SGACAAVVIG YMQKKLAKQV
TVELPGGKLR IFWQGPGHPV KMSGPATHVF DGQISI
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