Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0073 |
Symbol | hemD |
ID | 3520357 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 76642 |
End bp | 77403 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637282540 |
Product | uroporphyrinogen-III synthase |
Protein accession | YP_266841 |
Protein GI | 71279895 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1587] Uroporphyrinogen-III synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAGTAA AACCACTTAA GGTCCTAATT ACTCGACCTA AAGCTAAAGC TCAGCAACTC GCCTTGTTAC TCAATCAACA AGGCATACTT AATACCAGCC AAACCTTATT TGATTATCAA AAGAATGCTA GCGCTAACGA CATAGCTACC GCGCTAGAAA ACGCAGATAT ATTGATCTTT GTTAGTGTTG CTGCCGTTGA ATTTGCTCAC GCCAGCTATC CTCTACCTAA CAACTTATCT CAAACCATTT TTGCTGTCGG TAATGCCACC AAAAAAGCAT TACAAGCAAT AGGCATGACC ACCATTTTAT CACCACCTCC ACAGCAAGAG CACAGTGAGG GTTTACTTAA ACTGCCACAA TTGTCTAAAG TTATAGGTAA AAGGATAATA ATCTTTCGTG GCAATGGTGG ACGAGAGCAC ATTGCTAACA GCTTAACGCT ACGTGGTGCT GAGGTTCGAT ATATCGAAAG TTACCAACGT GTATGGCGAA CATTACCAAT AATTATTGCT GAGCAATGGC GAGCACAAAA AATTAACTGT ATTGTCGTTA CCAGTAACGA TATATTATTA GCATTACTAA AGTACCTAGC CAGTACAACA AATAGCACAG ATAATTATTG GCAATCTCAA TGTTTGTGGG TTGTGGTCAG TGATCGCATT GAAAAAAATG CCAAAGCCTT AGGCTTAAAA CGGGTCATTA ATACCCATGG CGCCAGCTCT CAAATACTCT GTAATACGTT ACAAGCACTC TCTTGTTCGT AA
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Protein sequence | MPVKPLKVLI TRPKAKAQQL ALLLNQQGIL NTSQTLFDYQ KNASANDIAT ALENADILIF VSVAAVEFAH ASYPLPNNLS QTIFAVGNAT KKALQAIGMT TILSPPPQQE HSEGLLKLPQ LSKVIGKRII IFRGNGGREH IANSLTLRGA EVRYIESYQR VWRTLPIIIA EQWRAQKINC IVVTSNDILL ALLKYLASTT NSTDNYWQSQ CLWVVVSDRI EKNAKALGLK RVINTHGASS QILCNTLQAL SCS
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