Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0020 |
Symbol | def1 |
ID | 3519823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 24812 |
End bp | 25327 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637282487 |
Product | polypeptide deformylase |
Protein accession | YP_266802 |
Protein GI | 71279368 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTATTT TAACTATTTT ACGTTTTCCT GATCCGCGTT TGAGAACAAA AGCGCAGCCC GTTACTGATA TAACTGACGC TACGGCTACA ATTATAGACG ATATGCTGGC AACTATGTAC GAAGAAAATG GCGTAGGTCT TGCCGCTACT CAAGTAGATA TTCATCAGCG CATTGTTGTC ATGGATACTT CTGAAGATAA TGACCAACCC ATCATCTTTA TCAATCCCGA AATTATTGCT ACTAGTAATG AAACATCGAT CAATGAAGAA GGTTGTTTAT CCGTGCCTGG TACTTATGCC AAAGTAGACC GTCATGATGC ATGTACTGTA AAAGCACTTG ATCGACACGG TAAAGAATTC TCTTTAAACG CTACGGAATT ACAAAGCATT TGTATACAAC ATGAACTTGA TCACTTAAAA GGTGTTTTAT TTGTTGATTA CCTATCCCCG CTAAAGCGTC AGCGCATTCA AAAAAAGCTT GAGAAAGAAG CAAAGACTGA CAAAAACAAC AAGTAA
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Protein sequence | MTILTILRFP DPRLRTKAQP VTDITDATAT IIDDMLATMY EENGVGLAAT QVDIHQRIVV MDTSEDNDQP IIFINPEIIA TSNETSINEE GCLSVPGTYA KVDRHDACTV KALDRHGKEF SLNATELQSI CIQHELDHLK GVLFVDYLSP LKRQRIQKKL EKEAKTDKNN K
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