| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1398 |
|---|
| Symbol | aroE |
|---|
| ID | 1223710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1760411 |
|---|
| End bp | 1761358 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637241261 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | NP_522957 |
|---|
| Protein GI | 17549617 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000150041 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.643629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGACG ACCTCCGCCC CTCGCTGCTG GCCGGGCTGA TCGGCGCGGG CATCCAGCGC
TCGCTGTCGC CGGCCATGCA CCAGCAGGAA GGCGACGCGC AGGGGCTGCG CTACGTGTAC
AAGCGCATCG ACCTGGAGGC GCTGGGCCTG ACGCCCGATG CGCTGCCGGA ACTGCTCACG
GCCGCCGAGC GCTTCGGCTT CGCCGGGCTC AACGTCACGC ACCCGTGCAA GCAGCGTGTG
CTGCACTATC TCGATGACCT GTCGGACGAT GCCCGCGCGC TGGGCGCCGT CAACACCGTG
GTCTTCGACA ACGGCCGCCG CATCGGCCAC AACACCGACT GGTGGGGCTT TGCCGAGAGC
TTCAAGCGCG GCCTGCCCGG TGCGCCGATG GGGCAGGTGG TGCAGCTCGG CGCGGGCGGC
GCCGGCGCGG CGGTGGCGCA CGCGATGCTG ACGCTGGGCG CGCAGTCGCT GACGCTGTTC
GATGTGGAGC CGGAGCGCGC GCGGCAACTG GCCGCGTCGC TGTGCGGGCG CTTCGGCCCG
GGCCGCGCGC AGGCCGGCAC CGACCTGGCC GCGGCGATGG CGGCGGCCGA CGGCCTGGTC
CACGCAACGC CCACCGGCAT GGCCGGCCAC CCCGGCCTGC CGCTGCCGCC CGATCTGCTG
CAGTCGCGGC ACTGGGTGGC CGAGATCGTC TACTTTCCGC TGGAGACCGA ACTGCTGCGC
CGCGCGCGCG CGCTCGGCTG CCGCACGCTC GACGGCGGCG GCATGGCCGT GTTCCAGGCG
GTGGGCGCGT TCGAGCTGTT CACCGGCATC GCGCCGAATG CGCACCGGAT GCTGGCCCAC
TTTGCCGCGC TGCAGGATGC CGAGGCAACG GCGCATGCCG GCGCCACAGA CCCTCACGGC
GTCGCGCGAC CGGGCATCGG TCTCGCTGCC GTTGCGCTCG GACGCTGA
|
|---|
| Protein sequence | MHDDLRPSLL AGLIGAGIQR SLSPAMHQQE GDAQGLRYVY KRIDLEALGL TPDALPELLT
AAERFGFAGL NVTHPCKQRV LHYLDDLSDD ARALGAVNTV VFDNGRRIGH NTDWWGFAES
FKRGLPGAPM GQVVQLGAGG AGAAVAHAML TLGAQSLTLF DVEPERARQL AASLCGRFGP
GRAQAGTDLA AAMAAADGLV HATPTGMAGH PGLPLPPDLL QSRHWVAEIV YFPLETELLR
RARALGCRTL DGGGMAVFQA VGAFELFTGI APNAHRMLAH FAALQDAEAT AHAGATDPHG
VARPGIGLAA VALGR
|
|---|
| |