| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1222 |
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| Symbol | nirB |
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| ID | 1223534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1553917 |
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| End bp | 1556475 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637241087 |
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| Product | nitrite reductase NADPH large subunit |
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| Protein accession | NP_522783 |
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| Protein GI | 17549443 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.356268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.678128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGA AGATCGTCGT CATCGGCCAC GGCATGGTGG GCCACAAGTT CCTGGAGAGC
CTGCTGCACG CCCCCGGCCA CGACCTGCAC GTCACCGTGC TGTGCGAAGA GCCTCGCCCC
GCCTACGACC GCGTGCACCT GTCCGAATTC TTCTCGGGCA AGACCGCCGA AGACCTGTCG
CTGGTCGCGC CGGGCTTTTT CGATCGCGAC GACGTGGTGC TCCGGCTCAA CGCCCGTGCG
GTCTCGATCG ACCGCGCGGC CAAGCAGGTC ACGGCCTCCA CCGGCGAAGT GCTGGCCTAC
GACAAGTTGA TCATGGCGAC CGGCTCGTCG CCGTTCGTGC CGCCGATTCC GGGCAAGGAC
CGCACCGACT GCTTCGTCTA TCGCACCATC GAAGACCTGG AAGCCATGCT CGAATGCGGC
CGGCGCGCCA GGACCGGCGT GGTGGTCGGC GGCGGCCTGC TGGGCCTGGA ATGCGCCAAG
GCCCTGCGCG ACATGGACCT GCAGACCCAC GTGGTCGAGT TCGCCGGCCG CCTGATGGCG
ATGCAGGTGG ACGACGGCGG CGGCCGCATG CTGCGCCGGA AGATCGAAGA CCTGGGCGTG
ACGGTCCACA CGCAGAAGAA CACGGTGGAG ATCGTCGACG GCGAGGACGG CACGCACCGC
ATGCGGTTCG CCGACGGCAC GCACCTGGAC GCCGACATGA TCGTCTTCTC GGCCGGCATC
CGTCCGCGCG ACGAGCTGGC GCGCCAGTGC GGCCTGGCCG TGGGCGAGCG CGGCGGCATC
GTGATCGACT CCGAGTGCCG CACCTCCGAT CCGGACGTCT ATGCCATCGG CGAGTGCGCG
CTGTGGGGCG GCAAGGTCTA CGGCCTGGTC GCGCCCGGCT ACGAGATGGC GCGCATCACC
GCCAGACAGA TCCTGGCGGC CGAAGAAGAG GCGGCCGCCT TCAACGGCGC CGACATGAGC
ACCAAGCTCA AGCTGATGGG CGTGGACGTG GCCAGCCTGG GCGACGCGCA GGGCAGCACG
CCGGGCAGCC GCAGCGTGCA GTTCGTCGAC GAGCGCAAGC AGATCTACAA GAAGCTGGTG
CTGTCGTCCG ACGGCAAGTT CCTGCTGGGC GGCGTGCTGG TGGGCGATGC GTCCGAGTAC
GGCACGCTGC TGCAGATGAT GCTCAACCGC ATCGAGCTGC CCGAGGCGCC CGAATTTCTG
ATCCTGCCGC AGGCCGACGG CAATGCGCGC CCGGCGCTGG GCGTGGATGC GCTGCCCGAC
GCGGCGCAGA TCTGCTCGTG CAACGACGTC TCCAAGGGCG CGCTGTGCCA GGCGGTGTGC
GCCGGCGCCA CCACCGTGGG CGCGCTAAAG GACGCCACCC GCGCGGGCAC CTCGTGCGGC
GGCTGCGTGC CGCTGATGAC GCAGGTGATG AAGGCCGAGA TGAAGAAGCA GGGCCTGGCC
GTCAACAACC ACATCTGCGA GCACTTCCCG TACTCGCGCC AGGAGCTGTA TCACCTGGTG
CGCGTGGGCC GCATCCAGTC GTTCGAGGCG CTGCTGGCGG CGCACGGCCA CGGCATGGGC
TGCGACATCT GCAAGCCCGC CGCGGCGAAC ATCCTGGCTT CGTGCTGGAA CGACTTCGTG
CTCAAGAAGG AGCACGCCGG CCTGCAGGAT TCCAACGACT ACTTCCTCGC CAACATCCAG
AAGGACGGCA CGTACTCCGT GGTGCCGCGC ATGCCGGGCG GCGAGGTGAC GCCGGAGGGG
CTGATCGCCG TCGGCCAGGT CGCCAAGAAG TATGGGCTGT ACACCAAGAT CACCGGCGGC
CAGCGCGTGG ACCTGTTCGG CGCGCGCCTG GAGCAACTGC CGCTGATCTG GGAAGAGCTG
ATCGCGGCCG GCTTCGAGTC GGGCCATGCC TACGGCAAGT CGCTGCGCAC GGTGAAGTCG
TGCGTGGGCT CGACGTGGTG CCGCTACGGC GTGGGCGATT CGGTGGGCCT CGCCATCCGC
CTGGAGAACC GCTACAAGGG CCTGCGCTCG CCGCACAAGC TCAAGTTCGG CGTGTCCGGC
TGCACGCGCG AGTGCGCCGA GGCGCAGGGC AAGGACGTCG GCGTGATCGC CACCGAGAAG
GGCTGGAACC TCTACGTGTG CGGCAACGGC GGCATGAAGC CCCGCCACGC CGAGCTGCTG
GCCGCCGACC TGGACGAGGC CACGCTCGTC AAGCTGGTCG ACCGCTTCCT GATGTTCTAC
GTGCGCACCG CCGATCGGCT GCAGCGCACC AGCACCTGGC GCGACAACCT GGAAGGCGGC
CTCGACTACC TGAAGGACGT AATCGTGGGC GACAAGCTGG GCTTCGCCGC CGAGCTGGAA
GCCGAGATGC AGCACGTGGT CGACACCTAC CAGGACGAAT GGAAGACCGC CGTGACCAAC
CCCGAAGTGC GCAAGCGCTT CCGCCACTTC GTCAACAGCG AGACGGCGGA CGCCAATGTC
GTGTTCGTCG AGGAGCGCGG CCAGATCCGC CCCGCCACGC CCGAAGAGCG GCGCGGCACG
CGCCCGGTGC GCATTCCCGT GGTCGCCGAA GCGGCCTGA
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| Protein sequence | MTMKIVVIGH GMVGHKFLES LLHAPGHDLH VTVLCEEPRP AYDRVHLSEF FSGKTAEDLS
LVAPGFFDRD DVVLRLNARA VSIDRAAKQV TASTGEVLAY DKLIMATGSS PFVPPIPGKD
RTDCFVYRTI EDLEAMLECG RRARTGVVVG GGLLGLECAK ALRDMDLQTH VVEFAGRLMA
MQVDDGGGRM LRRKIEDLGV TVHTQKNTVE IVDGEDGTHR MRFADGTHLD ADMIVFSAGI
RPRDELARQC GLAVGERGGI VIDSECRTSD PDVYAIGECA LWGGKVYGLV APGYEMARIT
ARQILAAEEE AAAFNGADMS TKLKLMGVDV ASLGDAQGST PGSRSVQFVD ERKQIYKKLV
LSSDGKFLLG GVLVGDASEY GTLLQMMLNR IELPEAPEFL ILPQADGNAR PALGVDALPD
AAQICSCNDV SKGALCQAVC AGATTVGALK DATRAGTSCG GCVPLMTQVM KAEMKKQGLA
VNNHICEHFP YSRQELYHLV RVGRIQSFEA LLAAHGHGMG CDICKPAAAN ILASCWNDFV
LKKEHAGLQD SNDYFLANIQ KDGTYSVVPR MPGGEVTPEG LIAVGQVAKK YGLYTKITGG
QRVDLFGARL EQLPLIWEEL IAAGFESGHA YGKSLRTVKS CVGSTWCRYG VGDSVGLAIR
LENRYKGLRS PHKLKFGVSG CTRECAEAQG KDVGVIATEK GWNLYVCGNG GMKPRHAELL
AADLDEATLV KLVDRFLMFY VRTADRLQRT STWRDNLEGG LDYLKDVIVG DKLGFAAELE
AEMQHVVDTY QDEWKTAVTN PEVRKRFRHF VNSETADANV VFVEERGQIR PATPEERRGT
RPVRIPVVAE AA
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