Gene RSp0390 details

Gene Information

• Locus tag: RSp0390
• Symbol: fliF
• ID: 1222697
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 494042
• End bp: 495877
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637240250
• Product: flagellar M-ring transmembrane protein
• Protein accession: NP_521951
• Protein GI: 17548611
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 24
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAACGA CAGCAGATTC CGTCGCTGTC GCCGACACGC TCGGTACGGT TGAAATGCCA 
GCGGTGGGCC AGGGCGCGAT CGTGCGCCAG AACGCAGGGG GGCTGGGCGC CCTCGGGCCG 
CTGGGCCGCC TGTCGCCGCG CATGCTGGCG ATGATCGCCG CCGCCGCGCT GATTGCCGTG 
GTCGCCGCCG GCATGCTGTG GAGCCGCGCC CCCAGCTATC GCGTCCTGTA CAGCAATGTG 
GCGGACAGCG ACGGGGGCGC CATCATCGCC GCGCTGCAGC AGATGAACGT GCCGTACCGC 
TTCGCGGACG GCGGCAGCGC CATCATGGTG CCCGAAGCCA ACGTGCACGA GGCCCGCCTG 
AAGCTGGCGG CGCAGGGGCT GCCCAAGGGC GGCCTGGCCG GCTTCGAGCT GATGGAGAAC 
CAGAAGTTCG GCACCAGCCA GTTTGTCGAA CAGGTCAATT ACCAGCGCGC CCTGGAGGGC 
GAGCTGGCCC GCACCATCCA GGCCATGCAG GAGGTGCAGT CCGCCCGCGT GCACCTGGCG 
CTGTCCAAGC CGTCGGTGTT CGTGCGCGAG CAGGTCAAGC CCAGCGCCTC GGTGCTGCTC 
AAGCTGTATC CGGGCCGCAT GCTCGACCGC TCCCAGGTGC AGGCCATCGG CCACCTGCTC 
GCCAGCAGCG TGCCGGACCT GCCGCTGGCC AACGTGACGG TGGTCGACCA GTCGGGCCGG 
CTGCTGTCGG CGTCGTTCCA GGACAACGCC TCGGGCCTGG ACCCGACCCA GCTCAATTAC 
GTCCGCGACA TCGAGCAAGG CTACATCAAG CGCATCGAGG CCATCCTCGG CCCGGTGGTG 
GGCGAAGACA ACGTGCGCGC CCAGGTGACC GCCAACGTCG ACCTCGACAA CACCGAGCAG 
ATGGCCGAGA CGTACCGTCC GAACCAGGAC CCGGCCAACG GCGCCGTGCG CAGCACGCAT 
ACCAGCGAAT CGACGCAGAA CAAGGCCGGC GCGCAGGGTG GCGTGCCGGG TGCGCTGTCC 
AACCAGCCGC CGACCGCGCC GCGCATGCTG CCGACCGCGC CGGCGCCCGC CGCGCAGCAG 
GCTGCTGCCG GACAGAACGG CCAGAATGGC CAGAACGGTC AGCAGCAGGG CGCCGCCGCC 
GGCACCGGTC AGGCCGCGGC CAACACCGCC GAGTCCAGCG CGCGCGACAC CACCATCAAC 
TACGAAGTCG ACAAGACCGT GCGCCGCACC CGCGCCGCGG TGGGCACCGT GCGCCGCCTG 
TCGGTGGCCG TGGTGGTCAA CTACCGCGCC GACGGCAAGA CGTGGAAGCC GCTGTCGGAT 
GCCGAGATGA CCAAGCTCAA CGCGCTGGTC AAGGACGCCG TGGGCTATGA CGCCAAGCGC 
GGCGATTCGG TGAACGTGGT CAACAGCCAG TTCTCGGGCA CGCTGCCGAC GTCCAAGGAC 
GACCTGCCGC TGTGGAAGCA GCCGGAGATG ATCCACTACG CCATCCAGGC CGCCAAGTAC 
GGTGCGCTGG CGATCGGGTT CCTGATCCTG GTGTTCGCCG TGATCCGCCC GCTGATCCGT 
TCGATGAACA AGAAGGACGA GCCCGTCACG GCCACCTTCG TGGGCCGCGA GGGCGAAGAC 
CCGAACGCGC CGATCATCAC CGGCGCGGCG GCCCCGGCCG GTCCGGAGCT CGAAGGCCCG 
TCGGTCGTCA CCGACGGCGA CGAAGTCCCG GACGAGCTGC CGCAGCTCAA GCAGAACCAC 
GATTTCGAAC AGAAGCTGGA GACGATGCGC CGCGTCGCCC AGCAGAACCC GCGCGCGGTC 
GCGGCCGTCA TCAAGCAATG GGTGAGTAAC GAATGA 

 

Protein sequence

MPTTADSVAV ADTLGTVEMP AVGQGAIVRQ NAGGLGALGP LGRLSPRMLA MIAAAALIAV 
VAAGMLWSRA PSYRVLYSNV ADSDGGAIIA ALQQMNVPYR FADGGSAIMV PEANVHEARL 
KLAAQGLPKG GLAGFELMEN QKFGTSQFVE QVNYQRALEG ELARTIQAMQ EVQSARVHLA 
LSKPSVFVRE QVKPSASVLL KLYPGRMLDR SQVQAIGHLL ASSVPDLPLA NVTVVDQSGR 
LLSASFQDNA SGLDPTQLNY VRDIEQGYIK RIEAILGPVV GEDNVRAQVT ANVDLDNTEQ 
MAETYRPNQD PANGAVRSTH TSESTQNKAG AQGGVPGALS NQPPTAPRML PTAPAPAAQQ 
AAAGQNGQNG QNGQQQGAAA GTGQAAANTA ESSARDTTIN YEVDKTVRRT RAAVGTVRRL 
SVAVVVNYRA DGKTWKPLSD AEMTKLNALV KDAVGYDAKR GDSVNVVNSQ FSGTLPTSKD 
DLPLWKQPEM IHYAIQAAKY GALAIGFLIL VFAVIRPLIR SMNKKDEPVT ATFVGREGED 
PNAPIITGAA APAGPELEGP SVVTDGDEVP DELPQLKQNH DFEQKLETMR RVAQQNPRAV 
AAVIKQWVSN E