| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0292 |
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| Symbol | cyaB |
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| ID | 1222424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 379620 |
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| End bp | 381797 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637240152 |
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| Product | cyclolysin-type secretion composite ATP-binding transmembrane ABC transporter protein |
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| Protein accession | NP_521853 |
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| Protein GI | 17548513 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0404575 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCA CCTCCATCGA CACCCCTGCC ACACCAGGGC CCGACCCCAC GCGCGCGGAG
AAGATCGACA CCGCCCTGGC CTGCATCCTG ATGATGGCCC GCCTGCACGG CATCGCCGCG
GAGGAAGCCC AGTTGCGCCA TGAGTTCGGC CACCGCACGT TCGAGACGCA GACGGCGCTG
CTGGCCGCCA AGCATCTGGG CCTGTCGGCC AAGGTGGTGC GCCAGCCGGC GGAGCGGCTG
CACCGGGCGC CGCTGCCGGC TATCGCCATC GACCGGTCCG GCCAGCACTT CATCCTGGCC
AAGTACGACG CGTCCAATGC CGACGAGCCC AAGCTGCTGG TCCAGCGGCC CGGCCAGCCG
CCGAGCGTGC TGACGCTGCA GGACTTTCTC GCGGCGTGGT CGGGTGAGCT GATCCTGTGC
ACCAGCAAGG CGAACTTCGC CGGAGACATG GCGAAGTTCG ACTTCACCTG GTTCATTCCC
GCCGTCATCA AGTATCGAAA GCTGCTGGGC GAAGTCCTGC TGGTGTCGCT CACGCTGCAG
ATCATCGGGC TGGTGACGCC GATGTTCTTC CAGGTGGTGA TGGACAAGGT GCTGGTCAAT
CACGCCATGA AGACGCTGAA CGTGATCGCC GTCGGCCTGA TCTGCGCGAT CCTGTTCGAG
GTGACGCTCA CCAGCATCCG CACCTGGGTG TTCGCGCATA CCAGCAGCAA GATCGACGTG
GAACTCGGCG CGCGGCTGTT CCGGCATCTG CTGAGCCTGC CGCTGGCGTA TTTCCAGTCG
CGGCGCGTGG GCGATTCGGT GGCGCGGGTG CGCGAGCTGG AGAACATCCG CAGCTTCCTG
ACCGGCAACG CCATGACGGT GGTGCTGGAC CTGCTGTTCT CGTTCGTGTT CCTGGCGGTG
ATGCTGTGGT ACAGCGTGTG GCTGACACTG ATCGTGGTGG TGTCGATTCC GCTGTATATC
GGGCTGTCGG CGGTGTTCAC GCCCATCATC CGCGCGCGGC TGGACGTGAA GTTCAACCGC
AATGCCGAGA ACCAGTCGTT CCTGGTGGAG ACCATCAGCG GCATCGATAC CGTCAAGGCG
ATGGCCGTGG AGCCGCGCTG GACGCACAAG TGGGATCAGC AGCTCGCCGC GTACGTCACC
GCCGGGCTGG CGGTGACCAA CGTGGCGACG GTCGCCAGCG GCGGCGTCAC GCTGGTCAGC
AAGCTGGTGA CGGCGGCCAT CATGTGGCTC GGGGCGACGC TGGTGATCGA CCACAAGATG
ACCGTGGGCG AGCTGGTGGC CTTCAACATG CTGGCCGGGC AGGTGTCGTC GCCCATCCTG
CGGCTGGCCC AGCTGTGGAA CGATTTCCAG CAGGTGGGGA TTTCGATGAG CCGGCTGGGG
GACATCCTGA ACGCGCGCAC CGAGGTCGCC GGCCAGAAAT CGCGCCTGCC GAAACTGGCC
GGCGCGATTG CGTTCGACCA GGTGGCCTTC CGCTACCGGC CCGATGCGCC CGATGTCATC
CGGGGGATTT CGCTCGCGAT CGCGCCGGGC GAGGTGATCG GCATCGTCGG CCGCTCGGGA
TCGGGCAAGA GCACGCTGAC CAAGCTGGTG CAGCGCCTGT ACGTGCCGGA GCGCGGGCGC
GTGCTGATCG ACGGGCAGGA CATCGCCATT GTCGATACGA CTTCGCTGCG GCAGCAGATC
GGCGTGGTGC TGCAGGAGAA CACGCTGTTC AGCCGCTCCA TCCGCGACAA CATCGCCCTG
ACGAATCCGG CGGCGCCGCT GGAGGCCATC ATCGAGGCGG CCAGGCTGGC CGGCGCGCAC
GAGTTCATCT GCGAGCTGCC GGAAGGCTAC GACACGATCG TCGGCGAGCA CGGCACCGGC
CTGTCGGGCG GGCAGCGCCA GCGCATCGCG ATTGCGCGCG CGCTGCTGAC GAATCCGCGC
ATCCTCATCT TCGACGAGGC GACCAGCGCG CTGGACTACG AGTCGGAGAA GATCATCCAG
GACAACATGC GGCGCATCTG CCAGGGGCGC ACCGTGCTGA TCATTGCGCA CCGGCTGTCG
GCGGTGCGCG AGGCCAACCG CATCATCGTC ATGGAACGCG GCCAGATCGC GGAAATGGGC
AGCCATGACC AGTTGCTGAA ACATCCGCAG GGCATCTACG CGCATCTGTA CGCCCTGCAG
CAGGGAGGTG CGGCATGA
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| Protein sequence | MTSTSIDTPA TPGPDPTRAE KIDTALACIL MMARLHGIAA EEAQLRHEFG HRTFETQTAL
LAAKHLGLSA KVVRQPAERL HRAPLPAIAI DRSGQHFILA KYDASNADEP KLLVQRPGQP
PSVLTLQDFL AAWSGELILC TSKANFAGDM AKFDFTWFIP AVIKYRKLLG EVLLVSLTLQ
IIGLVTPMFF QVVMDKVLVN HAMKTLNVIA VGLICAILFE VTLTSIRTWV FAHTSSKIDV
ELGARLFRHL LSLPLAYFQS RRVGDSVARV RELENIRSFL TGNAMTVVLD LLFSFVFLAV
MLWYSVWLTL IVVVSIPLYI GLSAVFTPII RARLDVKFNR NAENQSFLVE TISGIDTVKA
MAVEPRWTHK WDQQLAAYVT AGLAVTNVAT VASGGVTLVS KLVTAAIMWL GATLVIDHKM
TVGELVAFNM LAGQVSSPIL RLAQLWNDFQ QVGISMSRLG DILNARTEVA GQKSRLPKLA
GAIAFDQVAF RYRPDAPDVI RGISLAIAPG EVIGIVGRSG SGKSTLTKLV QRLYVPERGR
VLIDGQDIAI VDTTSLRQQI GVVLQENTLF SRSIRDNIAL TNPAAPLEAI IEAARLAGAH
EFICELPEGY DTIVGEHGTG LSGGQRQRIA IARALLTNPR ILIFDEATSA LDYESEKIIQ
DNMRRICQGR TVLIIAHRLS AVREANRIIV MERGQIAEMG SHDQLLKHPQ GIYAHLYALQ
QGGAA
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