| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0058 |
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| Symbol | stcD |
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| ID | 1222606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 65014 |
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| End bp | 67077 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239917 |
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| Product | stachydrine utilization oxidoreductase protein |
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| Protein accession | NP_521619 |
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| Protein GI | 17548279 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.102605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTATC CCCACCTGTT TAAACCCCTG CAGCTCAACC AGTTGACGTT GCGCAATCGG
ATCGTCAGCA CCGCGCACGC AGAGGTGTAT GCGGAGCCGG ACGGCCTGCC GGGCGAGCGC
TACATCCGCT ATTACGAGGA AAAGGCGAAG GGCGGTGTTG GCCTGGCCGT GTGCGGTGGG
TCGAGCCCCG TGTCGATCGA CAGCCCGCAA GGCTGGTGGA AGTCTGTGAA TCTGGCAACG
GACAGGATCA TTGACCCACT CGCGCGGCTG GCCGAAACGA TGCACCGGCA CGGCGCGAAG
ATCATGATTC AGGCGACGCA CATGGGCCGC CGCTCGGCGT TCCATGGTGA GCACTGGCCG
CACCTGATGT CGCCGTCGGG CGTGCGCGAG CCCGTGCACC GCGGCAACGC GAAGATCATC
GAGGTGGAAG AGATCCAGCG CATCATCACC GACTTCGCGG CAGCGGCGAA GCGTGTGAAG
GCGGCAGGCA TGGACGGCAT CGAGATCTCC GCCGCGCACC AACACCTGAT CGACCAGTTC
TGGAGCCCGC GCACCAATCA CCGTACGGAC GAATGGGGCG GCAGCCTCGA AAATCGCCTG
CGTTTTGGCG TTGAAGTGCT GAAGGCGGTG CGCGAAGCGG TTGGCAAGGA TTTCTGCGTT
GGCCTGCGGA TGTGCGGCGA CGAATTCCAC GAAGACGGCC TCGATCACGA ACAACTGAAG
GAAATCGCGC AGGCCATGTC TGAGACCGGC CTGATCGACT ATCTCGGCGT GATCGGCTCA
GGTGCCGACA CGCACAACAC GCTCGCGAAC TGCATGCCGC CGATGGCGCT GCCGCCGGAG
CCGTTCGTGC ATCTTGCGGC GGGCATCAAG TCGGTCGTGA AGGTGCCCAT CATGCATGCG
CAGAGCATTC GCGATGCGGG CCAGGCCGAA CGGCTGCTTG CGAGCGGGAT GATCGATCTC
GTTGGCATGA CGCGCGCGCA GATGGCCGAT CCGCATATGG TCATCAAGAT TCGCGATGGC
CGCGAGGACG AGATCAAGCA ATGCGTGGGT GCGAACTACT GTATTGACCG CCAATACAAC
GGCCTCGATG TGTTGTGCAT CCAGAACGCC GCGACCTCGC GCGAAGAGAC GATGCCGCAC
GTGATCGAGA AATCGCGCGG CCCGAAGCGC AAGGTGGTCG TGGTGGGTGC GGGGCCCGCT
GGGCTCGAGG CAGCGCGCGT CGCGCGATCG CGCGGGCACG ACGTTGTGCT GTTCGAGAAG
AACCACGAGG TCGGCGGGCA GATCATGCTG GCCGCCAAGG CGCCGCAGCG CGAACAGATG
TCGGGCATCG TGCGGTGGTT CGACATGGAG ACGAAACGCC TCGGTGTGGA TCGGCGGCTG
GGGGTGGAAG TTGACACGAA GGCGATCATG GCTGAGAAGC CGGACATCAT CGTGCTCGCA
ACCGGTGGCC GGGCCTTCTC CGACCAGGTG CCGGACTGGG GCGTCGCCGA CGGCCTGGCC
GTCAGTTCGT GGGACATCCT CTCCGGAAAG GTCGAGCCGA AGCAGAACGT ACTGGTCTAT
GACGGCGTCA GCACGCACGC CGGCGCGGGG GTCGCAGACT TCATCGCCAG CCGCGGCTCC
AAGGTCGAGA TCGTCACGCC TGACGTGAAG GTCGCCGACG ACTGCGGTGG CACGACGTTC
CCGATCTTCT ACCGGCGCCT GTATGCGCAA GGGGTCATCC ACACGCCCAA CTACTGGCTT
GACCGCGTGT ACGAGGAAGA CGGCAAGAAG ATCGCAGTGA TTCGCAACGA GTACACCGAG
GAGCTGGAGG AGCGTGCCAT CGATCAGGTC GTGATCGAAA ACGGCATCAC GCCCAACGAC
GCGCTGTACT GGAAGCTGAA ACCGGAATCG GTGAACCGCG GACAGATCGA CGTGCACAAG
CTGTTCGCGG CCGAGCCACA GCCGTGGCTC TCGGAAGAGC TGGGCAACGG CCGGTTCCTG
CTGTTCCGCG TTGGTGACTG CATTTCGATG CACAACATCC ACGGCGCGAT CTACGACGCG
CTGCGCCTCG TGAAGGATTT CTGA
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| Protein sequence | MRYPHLFKPL QLNQLTLRNR IVSTAHAEVY AEPDGLPGER YIRYYEEKAK GGVGLAVCGG
SSPVSIDSPQ GWWKSVNLAT DRIIDPLARL AETMHRHGAK IMIQATHMGR RSAFHGEHWP
HLMSPSGVRE PVHRGNAKII EVEEIQRIIT DFAAAAKRVK AAGMDGIEIS AAHQHLIDQF
WSPRTNHRTD EWGGSLENRL RFGVEVLKAV REAVGKDFCV GLRMCGDEFH EDGLDHEQLK
EIAQAMSETG LIDYLGVIGS GADTHNTLAN CMPPMALPPE PFVHLAAGIK SVVKVPIMHA
QSIRDAGQAE RLLASGMIDL VGMTRAQMAD PHMVIKIRDG REDEIKQCVG ANYCIDRQYN
GLDVLCIQNA ATSREETMPH VIEKSRGPKR KVVVVGAGPA GLEAARVARS RGHDVVLFEK
NHEVGGQIML AAKAPQREQM SGIVRWFDME TKRLGVDRRL GVEVDTKAIM AEKPDIIVLA
TGGRAFSDQV PDWGVADGLA VSSWDILSGK VEPKQNVLVY DGVSTHAGAG VADFIASRGS
KVEIVTPDVK VADDCGGTTF PIFYRRLYAQ GVIHTPNYWL DRVYEEDGKK IAVIRNEYTE
ELEERAIDQV VIENGITPND ALYWKLKPES VNRGQIDVHK LFAAEPQPWL SEELGNGRFL
LFRVGDCISM HNIHGAIYDA LRLVKDF
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