| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0048 |
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| Symbol | soxA1 |
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| ID | 1222596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 51971 |
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| End bp | 55057 |
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| Gene Length | 3087 bp |
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| Protein Length | 1028 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239907 |
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| Product | sarcosine oxidase subunit alpha |
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| Protein accession | NP_521609 |
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| Protein GI | 17548269 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.416697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA AAGACCGTCT CGGTACGGGT GGCCGTATCA ACCGCGCAAA TCCGTTGACG
TTCACGTTCA ACGGCCGTAC GTATCAAGGT TTCCAGGGCG ATACGCTCGC GTCGGCACTG
CTGGCGAATG GCGTGCATTT CGTGGCACGC AGCTTCAAGT ACCACCGCCC GCGCGGCATC
ATGACCGCAG GTGTGGAAGA ACCGAATGCA GTGGTGCAGC TTGAGTCAGG CCCCTACAGC
GTGCCGAACG CGCGCGCGAC AGAGATCGAG CTGTATCAGG GCCTGGTTGC CAACAGCGTG
AATGCAGAAC CCTCGCTGGA GAACGACCGC TACGCGATCA ACCAGAAGTT CTCGCGCTTT
CTGCCGGCCG GGTTCTACTA CAAGACCTTC ATGTGGCCGC GCAAGATGTG GCCCAAGTAC
GAAGAGAAGA TTCGCGGAGC GGCAGGCTTG GGTAAGGCGC CCGACATGCG CGATGCCGAT
CGCTATGACA AGTGCTACGC GCACTGCGAC GTGCTGGTCG TGGGCGGTGG GCCGACCGGC
CTGGCGGCTG CACATGCCGC AGCAACGGCC GGCGCACGCG TGATTCTCGT GGATGACCAG
CGCGAACTCG GCGGGAGCCT GCTCTCGTGC CGAGCGGAAA TCGACGGCAA GCCGGCGCAG
CAGTGGGTGG AAAAGATCGA GGCCCAGCTG CGCAAGCTGC CGGATGTGAC CATCCTCACG
CGGAGCACGG CGTTCGGCTA TCAGGACCAC AACCTCATTA CGGTGACGCA GCGCCTGACC
GATCACCTGC CGATTTCGAT GCGCAAGGGC ACGCGTGAGC TGCTGTGGAA GGTGCGCGCC
AAGCGGGTCA TCCTGGCGAC CGGCGCGCAC GAACGCCCGC TCGTGTTCGG CAACAACGAT
CTCCCGGGCG TGATGATCGC AGGGGCGGTG TCTTCGTACA TCCATCGCTA TGGCGTGTTG
CCCGGCCGCG AAGCCGTTGT GTTCACGAAC AACGACCGCG CTTACCAAAC CGCGCTGGAT
CTGAAGGCGT GCGGCGCGAA GGTCACGGTT GTGGACTCGC GTGCCGCTAC CGACGGAGCA
CTGCCCGCTG CTGCGAAGCG GCAAGGCGTG ACGGTGATGA ACGGCGCGGT GATCACCACT
GCCTCCGGCA AGTGGCGCGT ATCGTCGGTC GATGTTGCCT CGTACGCGAA CTCAAACGGC
GCGGTCGTCA CGGCGGCCCC GGCGCAGATG CGCGTGTCAT CGGCCGATGT GGCGGCCTAC
CAAGGCGGGC AAGTCGGCGG AAAGATCAAG ACGCTGCCCT GCGATATCGT CGCGACATCG
GGAGGCTTCA GTCCTGTCTT GCACCTCTTC GCACAATCGG GCGGGAAGGC GCAGTGGGAC
GATGCAAAGG CGTGTTTTGT ACCCGGCAAG CCCATGCAGG CGGAAGTGAG TGTGGGGGCT
GCGGCGGGAA AGTTCACGCT CGCAGAGGCC TTGAAGCTTG CCGTGGACGC AGGCGCCGAG
GCGGCAAGGA TTGCTGGTTT CGCCGCTGCA CAACGCCCCG TCGCACCGAA AGTGACGGAT
GTGAAGGAAA GCGCGCTGCA GCCGCTCTGG CTCATCGGGG ATACCAAGTC CGCCACACGT
GGGCCGAAGC AGTTCGTCGA TTTCCAGAAC GATGTGGCAG TGACCGACAT CCTGCTTGCC
GCGCGCGAGG GTTTCGAATC GGTCGAGCAC GTCAAGCGCT ATACGGCCAT GGGCTTCGGC
ACCGATCAGG GCAAGCTGGG CAACATCAAC GGGATGGCCA TTCTTGCGCA GGCGTTGGGT
AAGACGATCC CGGAAACCGG CACGACCACG TTTCGCCCGA ACTACACGCC CGTCACGTTC
GGTACGTTCG CCGGGCGCGA ACTGGGCAAT TTCCTCGACC CGGTCCGCAA GACCTGCGTT
CACGAATGGC ACGTCGAGCA CGGTGCGCTG TTTGAGGACG TGGGCAACTG GAAGCGCCCC
TGGTACTTCC CGAAGAAGGG CGAAGACCTG CATGCGGCGG TCAAGCGGGA ATGCCTTGCG
GTGCGCAACA GCGTCGGCAT TCTGGATGCC TCCACGCTTG GCAAGATCGA CATCCAGGGC
CCGGATGCGG TGAAGCTGCT CAACTGGATG TACACCAACC CGTGGGGCAA GCTCGAAGTC
GGCAAATGCC GCTATGGGTT GATGCTCGAC GAGAACGGCA TGGTGTTCGA CGACGGCGTG
ACCGTACGCC TGGCCGATCA GCATTTCATG ATGACGACCA CGACGGGTGG TGCGGCCCGC
GTACTGACCT GGCTCGAGCG CTGGCTGCAA ACCGAATGGC CCGACATGCG GGTGCGGCTC
GCGTCTGTCA CCGATCACTG GGCGACGTTT GCGGTGGTCG GCCCCAAGAG CCGCAAGGTG
GTGCAGAAGG TCTGTCAGGA CATCGACTTC GGCAACGAGG CGTTCCCGTT CATGAGCTAC
CGGAACGGCA CCGTGGCCGG CGCAAAAGCC CGCGTTATGC GGATCAGCTT CTCGGGCGAA
CTGGCCTACG AAGTGAACGT GCCGGCCAAT GCGGGCCGCG CCGTGTGGGA AGCGTTGATG
GCCGCGGGCG CCGAGTTCGA CATCACGCCA TACGGCACCG AAACCATGCA CGTGCTGCGT
GCCGAGAAGG GCTACATCAT CGTCGGCCAG GACACGGATG GGTCGATCAC TCCGCACGAC
CTGGGCATGG GCGGCATGGT CGCTAAGACG AAGGACTGCC TCGGCAAGCG CTCGCTCACG
CGGTCGGACA CCGCCAAGGA GGGCCGCAAG CAGTTTGTCG GCCTGCTGAC CGATGACGCA
CAGTTCGTGT TGCCCGAAGG CGCGCAGATC GTCACCAACG GCACGCAGGT TTCTGCAGAG
AGCCCGACAC CGATGGTCGG CCACGTGACG TCGAGCTACT ACAGCCCGAT CCTGAAGCGG
TCGATTGCGC TGGCGGTGGT CAAGGGTGGC CTGAGCAAGA TGGGCGAGAG CGTGGTGATT
CCGCTGGCCA ACGGCAAGCG CGTCACCGCG AAGATCTCGA GCCCGGTTTT CTACGATACG
GAAGGGGGGC GCCAACATGT GGAATGA
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| Protein sequence | MSQKDRLGTG GRINRANPLT FTFNGRTYQG FQGDTLASAL LANGVHFVAR SFKYHRPRGI
MTAGVEEPNA VVQLESGPYS VPNARATEIE LYQGLVANSV NAEPSLENDR YAINQKFSRF
LPAGFYYKTF MWPRKMWPKY EEKIRGAAGL GKAPDMRDAD RYDKCYAHCD VLVVGGGPTG
LAAAHAAATA GARVILVDDQ RELGGSLLSC RAEIDGKPAQ QWVEKIEAQL RKLPDVTILT
RSTAFGYQDH NLITVTQRLT DHLPISMRKG TRELLWKVRA KRVILATGAH ERPLVFGNND
LPGVMIAGAV SSYIHRYGVL PGREAVVFTN NDRAYQTALD LKACGAKVTV VDSRAATDGA
LPAAAKRQGV TVMNGAVITT ASGKWRVSSV DVASYANSNG AVVTAAPAQM RVSSADVAAY
QGGQVGGKIK TLPCDIVATS GGFSPVLHLF AQSGGKAQWD DAKACFVPGK PMQAEVSVGA
AAGKFTLAEA LKLAVDAGAE AARIAGFAAA QRPVAPKVTD VKESALQPLW LIGDTKSATR
GPKQFVDFQN DVAVTDILLA AREGFESVEH VKRYTAMGFG TDQGKLGNIN GMAILAQALG
KTIPETGTTT FRPNYTPVTF GTFAGRELGN FLDPVRKTCV HEWHVEHGAL FEDVGNWKRP
WYFPKKGEDL HAAVKRECLA VRNSVGILDA STLGKIDIQG PDAVKLLNWM YTNPWGKLEV
GKCRYGLMLD ENGMVFDDGV TVRLADQHFM MTTTTGGAAR VLTWLERWLQ TEWPDMRVRL
ASVTDHWATF AVVGPKSRKV VQKVCQDIDF GNEAFPFMSY RNGTVAGAKA RVMRISFSGE
LAYEVNVPAN AGRAVWEALM AAGAEFDITP YGTETMHVLR AEKGYIIVGQ DTDGSITPHD
LGMGGMVAKT KDCLGKRSLT RSDTAKEGRK QFVGLLTDDA QFVLPEGAQI VTNGTQVSAE
SPTPMVGHVT SSYYSPILKR SIALAVVKGG LSKMGESVVI PLANGKRVTA KISSPVFYDT
EGGRQHVE
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