Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05482 |
Symbol | RSp1137 |
ID | 1223449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1432475 |
End bp | 1437028 |
Gene Length | 4554 bp |
Protein Length | 1517 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637241002 |
Product | putative RHS-related transmembrane protein |
Protein accession | NP_522698 |
Protein GI | 17549358 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG3209] Rhs family protein [COG4104] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.489685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.876645 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGATC ACGATCCGAG TACGCAACCG CCCGCCGAGC CGAGCGGCAG CGCCGAAGCG CGCCTGGCCG CGCTGCAGAC ACTGGAAAAC GGCGAGGCGA CCAAGCAGTC CCAGATGAAA TGGGTGGACG GCGCCAACTA CGGCATGCTC GGCGCCGATG TGGGGTATGG CGTCTATGCG GCGGGCTCCG CCGCGATGGG CGCGGGCGCA ACCGGTGCCG CGGCCGCCGG CGCCGCCGCG GTGGCCGCGG TGCCGGCCGT CGTGGCGCTG GGCGGGTCGT GGCTGCTCGG CAAGATGGGT GTCACGGGCA AGCTCGAGGA GGGCTTCGAG TGGGTCGGCG ACAAGCTGGG CCTGACCATC GGGCGGGGCG ATCCGCATCC GGCCTGCGTC GGCGACGACA TCGCGCACTC CTCGGGCTTC TGGGGCATGG TCGCGGGGCT GGCGGTGGGC GTCGCGATCG GTGCGATGGT GGCGGCGACC GTGGCGACCG GCGGGCTGGC CGGCGCCCTG CTGGTCGGGG CCTGCATGGC GGGCGGTCTG AGCATCGGCG GCGCGCTGGC GGGGGCCAGC CAGAACATGG GCAGCAACTG CGGCAAGATC GCCACGGGCT CGGGCAACGT CACCTTTGAA GGCAAGGCCG CCGCGCGCGT GACGGACCTG ATCGCCTGCA CCAAGCACCC CGGGCCGGAG CCGCTGGTCG AAGGCAGCCT GACCATCACG ATCAACGGAT TGCCGAGCGT GCGCATCGGC CATGCGTCGC ATTGCAGCGG CAAGGTCAAC TCGGGCCGCA AGAGCATCTG GATCGACAAG ACCACCGGCC AGTTCGGGCC CAAGAACCCC GAGCTGACCG CCGGCGAGGA ATTCCTCGCC GGGCTGCTGG GCGGGCTGGT CGGCGCCAAG ATCGGCGGCG CGGTCGGCAG GGGCCGGCGC GAGCCGACCG AGTCCGCCGA GCGGCAGGGC GTCAAGGACG AGACCACCAC GCCCTGCAAG GACCCGATCG ACGTCGCCAC CGGCGAGATG GTCGATTTCC GCGACGATCT CGCCATCCCC GGCGTCCTGC CGCTGACGCT GACGCGCCGC TACCGGACGC GCTCCGACGA CGCGGGCCTG CTCGGGCCGA AGTGGTCGGT CAACTGGTCG CAGCATCTGC GCCTGGACGA TGGCCACCTC GTCCGCTTCA ACGATGGCGG CGGCCTGATC ATCACCTTCG AGGCTCCGGA CGCGGAGCTC AACGGCATCA ACCTGCGCGA GCCGCGCTAC CGCCTGGAAG GCACCCGCGC CGCACCGCGC ATCCTCGACG ACGACACGCG CCGGGTGCTG GTCTTCTCGC CGCTGGCCGA CGGCGCCGTC GCGCGGCTGG AGCGCATCGA AGACCACAGC GGCAACGCCA TCGCCTTCGA TTACGACGAG CACGGCCGCC TGATCGCGCT GCGGCATACC TCGGGTTACC GGCTCGCGCT GGCCTACCCG GGCGGCGCGC ACACCGTCGC AAGCATCACG CTGCACGAAG CGTCCGGCGC AACGCATCGC CTGGTCGACT ACGCCTATGA CGGCCCGATG CTGGCGCGGG TGTCGAGCTT CCAGCACGGC ACGTTCCATT ACACCTACGA CCATCGCGGC TGGATCACCG GCTGGCGCGA CACCGACCAG ACCGACGTGC GCTACCGCTA CGACGAAGCG GGCCGCGTGG TCGAGACCGG CACCCGCGAG GGCTATCACA CCGGTCACCT CGTCTACGAA GACGGCCGCA CCCGGGTGCT CGACGCCGAC GGTGAATGGC TCTACGAACA CAACGCCGAA GGCCTCGTCA CGCGCGAGAC CGATCCGCTG GGCAACAGCA CGCAGCGCGA ATGGCAGCTC GGTCGCTTGA CTTCGGAGAC CGATCCGCTG GGCCGGCGCA CCGACTTCAG CCACGACGCG CAGGGCAAGC TGACCGGCGT GCGCGAGCCC TCCGGCGCGG TCACGCAATT CCAGTACGAC TCGCAGCGCC GGCTGGCCGC GATGGCGCTG CCGACCGGCG ACCGCGTGGC GCTGGAGTAC GACAAGCAGC ACCGCCTGAT CGCCCGTACC GAACCGGACG GCACCGTCAA GCGCTACCGC TACGGTGAGC GCGGCGAGCT CCTGCGCATG GTGGACGGCG AGCGCGAAAC CCGCCTCGAC TACGACGACC AGCTCCGCCT CGTGGTCACG CGCCTGCCGT CCGGCGCCAG GCTCGGCACG CGCTTCGACG TGCTCGGGCG CCTGCTGGAA GACACCGACC CGGACGGCAA CGCCACCCGC TACGACCACG CCAGCGGCCC GCACAACCCG CGCGGCAACG TCGCCCAGAA AACGCTCGCC GATGGCACGG CGCACCGCAC GGTCTACAAC AGCGAAGGAC TGCCCATCGA GCAGACCGAC CCGCTCGGCC GCACCACGCG CACCACCTAC GGCCCGTTCG ACCTCGTCAC CGGCACCATC GACGCTGCCG GCCACGCGAC GCGCTTCGAG TACGACCACG CCACGCGGCT GACCCGCATC GTCAATGCCC TGGGCGAGGC CTGGACCTAC CGCTACGACG CCGCCGGCCG CCTCGCCGCC GAGACCGACT GGGGCGGACG CACCACCGGC TACACGCGCG ATGCCGCCGG CCGCCTGCTG ACCAAAACGT TGCCCGATGG CGGCGCCTGG CACTACCGCT ACGACCTCGC CGACCGCCTC GTCGCGGTGG ACGCCGGCGA CGTCACGCTG ACCTACCGCT ACGACGCCGC CGGCCGCCTG ACCGCCGCGG CGGTGCACCA CGATGCGGCC ACCCACGTCA CGCGCTTCCG CTACGACGGC AACGGCCGCG TGATCGAAGA AGACCAGCAC GGCCAACTGC TCAAGCACAT CTACGACGCC CAGGGCCAGC GCACCCTGCG CAAGACGCCG CACCGCGAAA CCCGCTACGG GTACGACGCG CTGGGCGCGC TGACGCAGGT CGGCGGACTG AGCATCACGC GCGACGGGCT GGGCCGCGAA ACCGGACGCC AGGCCGGCGA CTTCATCGCA CAGCGCCAGT ACGACGCCCT CGGCCGCCTG CTGCGCCAGG CCGCCGGCCC GCGCGCCGCG TTCGAGGCCA TGCAGACGGA CCCGGTGCAA GCGCTCCAGT GGCTGACCCG CCAGAGCTAC CGCTACGACG CCGCCGGCCA GCTCGCACAG GTCGAGACGG ACACCGACCG CTTCACCTAC CAGCACGACC CGCGCGGGCA GGTCACCTCG GTCAGCAGCA TCCGCCAGCC GGCCGAGCAC TACACCTACA ACGCGGCGCA GAACATCGCC GCCCACGGCC GACAGGGCCC GATCGACGGC CGCCACTACC TGCCCGGCGG CCTGCCCGAG CGCGTCGGCC ACACGCGCTA CCGCTACGAC GCCCGCGGCC GCACCATCGA AAAGACCATC GAACAGCCCG GCTTCCGCCC GAAGACGTGG CGCTACGAAT GGGATGGCCT GAACCGGCTG GTGAAGGTGC ACACGCCGGA CAAGGGCTCC TGGGCGTACC GCTACGACGC GTTCAACCGG CGCGTGGAGA AGGTCAACAC GGGCACCGGG GCGTCGGTGC GGTTCGTGTG GGATGGCTAT ACGGTGGCGG AGCGGTGGGG GCAGAAGCGG GACGGTTCAA CGGGCACCGC CACGACATGG CACTTCGAGC CGGACAGCCA CACGCCGCTC GCGCAGGAGA CCGACGCGCA GCACTACGCC GTGTTCTGCA ACCCCACCGG CCTGCCGCTG GAAATCTATC GCGCCACCGG CGAGAAGGTC TGGGCGTCCC GATACAACCT CTGGGGGCAG GCGCTGTCGG AAGACACGCC GCCGGGCGAC GAGGCGCTGG ATACCAGCCT GCGCTTTGCC GGCCAATGGG CGGATGAAGA ATCCGGCCTG CACTACAACC TGAATCGCTA CTACGATCCG GACAGCGGCT GTTACCTCAG CATCGATCCG ATCGCGATCC GGGGTGGGCA CCGGACGCAG GGGTATGTGC AGAATCCTTT GTGGGAGGTG GATCCGCTGG GGTTGGCGGT GTGTGAGAAG CGGTATGCGC GTTACAAGGA GCTTCGAAAT GAAGGAATGT CGCCTGCGGA GGCGGCTAGG CTGTCGAGGG AAGGGGCTTT GCCTGGCGTG CCGGGAAGTC AAGGGGGAAC CGCTGCAGGC GGCCGCAAGT TCGGACCGAA ATCAGGGGAA TCTGAACCCA ACTGGGGGGA TCTGGTCAGG AAGTATGAGG GTGACCCTCC CGCCGATATG ACCAACCCAC ACGGGCACCA CGCGGTGTTC AAGAAGGGGC GCGGTACCAA GATGAGAGAA TATTTGGATG AGAGTAAAGA TATCTTAGAA AACTACGATA TCGATTGGTA CAAGGGGCGT GAGAATTTAG GGTGGGCTCC AAACAAGAAT CATAGTACAG CTGCCGCTAA AGCGGTTCGA GATGCGCTGA AGGATGCCCA TGAAAATATT GGTACAAAGG AAGCAGTCGT TGAGGCGTTG TCAAAAATAA AGAAGCATTT TAGAGACGAC ACGATCGGTA CGATTTTTGA ATAA
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Protein sequence | MADHDPSTQP PAEPSGSAEA RLAALQTLEN GEATKQSQMK WVDGANYGML GADVGYGVYA AGSAAMGAGA TGAAAAGAAA VAAVPAVVAL GGSWLLGKMG VTGKLEEGFE WVGDKLGLTI GRGDPHPACV GDDIAHSSGF WGMVAGLAVG VAIGAMVAAT VATGGLAGAL LVGACMAGGL SIGGALAGAS QNMGSNCGKI ATGSGNVTFE GKAAARVTDL IACTKHPGPE PLVEGSLTIT INGLPSVRIG HASHCSGKVN SGRKSIWIDK TTGQFGPKNP ELTAGEEFLA GLLGGLVGAK IGGAVGRGRR EPTESAERQG VKDETTTPCK DPIDVATGEM VDFRDDLAIP GVLPLTLTRR YRTRSDDAGL LGPKWSVNWS QHLRLDDGHL VRFNDGGGLI ITFEAPDAEL NGINLREPRY RLEGTRAAPR ILDDDTRRVL VFSPLADGAV ARLERIEDHS GNAIAFDYDE HGRLIALRHT SGYRLALAYP GGAHTVASIT LHEASGATHR LVDYAYDGPM LARVSSFQHG TFHYTYDHRG WITGWRDTDQ TDVRYRYDEA GRVVETGTRE GYHTGHLVYE DGRTRVLDAD GEWLYEHNAE GLVTRETDPL GNSTQREWQL GRLTSETDPL GRRTDFSHDA QGKLTGVREP SGAVTQFQYD SQRRLAAMAL PTGDRVALEY DKQHRLIART EPDGTVKRYR YGERGELLRM VDGERETRLD YDDQLRLVVT RLPSGARLGT RFDVLGRLLE DTDPDGNATR YDHASGPHNP RGNVAQKTLA DGTAHRTVYN SEGLPIEQTD PLGRTTRTTY GPFDLVTGTI DAAGHATRFE YDHATRLTRI VNALGEAWTY RYDAAGRLAA ETDWGGRTTG YTRDAAGRLL TKTLPDGGAW HYRYDLADRL VAVDAGDVTL TYRYDAAGRL TAAAVHHDAA THVTRFRYDG NGRVIEEDQH GQLLKHIYDA QGQRTLRKTP HRETRYGYDA LGALTQVGGL SITRDGLGRE TGRQAGDFIA QRQYDALGRL LRQAAGPRAA FEAMQTDPVQ ALQWLTRQSY RYDAAGQLAQ VETDTDRFTY QHDPRGQVTS VSSIRQPAEH YTYNAAQNIA AHGRQGPIDG RHYLPGGLPE RVGHTRYRYD ARGRTIEKTI EQPGFRPKTW RYEWDGLNRL VKVHTPDKGS WAYRYDAFNR RVEKVNTGTG ASVRFVWDGY TVAERWGQKR DGSTGTATTW HFEPDSHTPL AQETDAQHYA VFCNPTGLPL EIYRATGEKV WASRYNLWGQ ALSEDTPPGD EALDTSLRFA GQWADEESGL HYNLNRYYDP DSGCYLSIDP IAIRGGHRTQ GYVQNPLWEV DPLGLAVCEK RYARYKELRN EGMSPAEAAR LSREGALPGV PGSQGGTAAG GRKFGPKSGE SEPNWGDLVR KYEGDPPADM TNPHGHHAVF KKGRGTKMRE YLDESKDILE NYDIDWYKGR ENLGWAPNKN HSTAAAKAVR DALKDAHENI GTKEAVVEAL SKIKKHFRDD TIGTIFE
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