| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05369 |
|---|
| Symbol | RSp0826 |
|---|
| ID | 1223133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1043287 |
|---|
| End bp | 1044222 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637240686 |
|---|
| Product | 5-dehydro-4-deoxyglucarate dehydratase |
|---|
| Protein accession | NP_522387 |
|---|
| Protein GI | 17549047 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.288036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGCT ATACGCCCAG CGAATTCGCC CACCAGATCG GCACCGGCCT GCTGTCCTTC
CCGGTCACGC ATTTCAAGTC CGACCTGTCG TTCGACGAGG CGGCGTATCG CGCCAACCTG
AGCTGGCTGT TCAGCCACGA AGCCGCCGGC CTGTTCGCCG CGGGCGGCAC CGGCGAGTTC
TTCTCGCTCA CCCCGGCCGA GACCGACCGC GTGGTCCGCG CCGCCGTGGC CGAGACCGGC
GGCCGCCTGC CGGTGATCGC CCCGGCCGGC TACGGCACCG CCATGGCCAA GGAATACTGC
CAAGCCGCCG AGGCCGCCGG CGCCGACGGC ATCCTGCTGC TGCCGCCGTA CCTGACCGAA
GCCTCCGCCG ACGGCGTGGC CGCGCACGTC GAGCAGGTCT GCAAGTCGAC CCGCCTGGGC
GTGATCGTCT ACAACCGCGC CAACCAGGTG CTCGACGAGA ACCACCTGGA GCGCCTGGCC
GAGCGCTGCC CGAACCTGGT CGGCTTCAAG GATGGCGTGG GCGACCTCGA ACTGATGACG
CGCATCTATT CCCGCCTGGG CGAGCGCTTC ACCTATATCG GCGGCCTGCC CACGGCCGAG
ACCTTCGCGA TGCCGTACCT GACGATGGGC GTGACGACCT ACTCGTCGGC CATCTTCAAC
TTCGTGCCGA AGTTCGCGCT GGATTTCTAC GCCGCCGTGC GCGCCGCCGA CCACGCCAAG
GCGTATGCGA TGCTCAATGA CTTCGTGTTG CCGTACATTG CCCTGCGCAA CCGCAAGCGC
GGCTACGCGG TGTCGATCGT CAAGGCCGGC ATGAAGGTGA TCGGGCGCAG CGCCGGCCCG
GTGCGCGCCC CGCTGACCGA CCTGACCGAG GCCGAACTGG CCGAGCTGTC CGCGCTGGTG
GCGCGCATTG CCGACGTGCA GAAGCTCGCG GCCTGA
|
|---|
| Protein sequence | MSRYTPSEFA HQIGTGLLSF PVTHFKSDLS FDEAAYRANL SWLFSHEAAG LFAAGGTGEF
FSLTPAETDR VVRAAVAETG GRLPVIAPAG YGTAMAKEYC QAAEAAGADG ILLLPPYLTE
ASADGVAAHV EQVCKSTRLG VIVYNRANQV LDENHLERLA ERCPNLVGFK DGVGDLELMT
RIYSRLGERF TYIGGLPTAE TFAMPYLTMG VTTYSSAIFN FVPKFALDFY AAVRAADHAK
AYAMLNDFVL PYIALRNRKR GYAVSIVKAG MKVIGRSAGP VRAPLTDLTE AELAELSALV
ARIADVQKLA A
|
|---|
| |