| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05195 |
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| Symbol | RSp0228 |
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| ID | 1222359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 284279 |
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| End bp | 286150 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637240087 |
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| Product | putative phenol-degradative gene regulator transcription regulator protein |
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| Protein accession | NP_521789 |
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| Protein GI | 17548449 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | [TIGR02019] bacteriochlorophyll 4-vinyl reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000454847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.120965 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCGC TGCCCCGCAT CTCCCTTGCC GAAGTGGCTC GCACCACGGG CACCGTCCTC
AGCCCGGCCG GCAGCGACCG CTGGAGCGCC GACTCGCAGC CGACCCTGGC CGACATCAGC
GAATGCCTGT ACTTCTCGCC CGGCGACGGA CGCATCTGGC TCAACGACCA GCGCATGCTG
CTGCTGCACA GCCGGGCGAT GGGCACGCTG CGGCGCGAGC TGATCGACAG CCTGGGCATC
GACCGCGCGC GCGGGCTGCT GACGCGCTCC GGCTACGTTT CGGGCGCGCA CGATGCGCGG
CTGGTGCGCG AGCGCTGGCC GGATGCCGAG CCGTCGGCCA TCCTCATCGC CGGCACGCGG
CTGCACACGC TGGAGGGCAT GGTCAAGGTG GTGCCGGTGA GCTTCAGCTA CGCGCCCGAG
AGCGGCCGCT ACCAGGGCGA ATTCCTGTGG CACAACTCGA GCGAAGACGA CGAGCACCTG
GAGGCCTACG GCGTCGGCAC CGCGCCGGCC TGCTGGCGGC AGCTCGGCTA TGCGATCGGC
TACGTCAGCA CGCTGCTCGG GCACCTGGTG ATCTTCCGCG AAGTGGAGTG CCGCGCGATG
GGCGCCGGCG TCTGCCGCGT GATCGGCAAA TCGGCGGAAC TGTGGGACGA CGCCAGCGAA
GACCTGCGCT ACCTGAACGC CCAGGATTTC GTCGACTCAG GCATGCTGGC CGCCAGCGCG
CCCGAGCCCG ACCAGCCACG CAGCGCCGCC CCGCCCTCCG GCCCGGACCG CCCGCCCGAA
GCGCACGACG CGCAGGACAG CGCCGCGCCC GCGCTGGTGG GCGCCTCGTC CGCGTTCAAC
GCCGCCTGCC ATCTGCTGCG CCGGGTGGCG CCCACCGATG CCACCGTGCT GTTCACGGGA
GAATCCGGCG TCGGCAAGGA GCGCTTCGCG CGCATGCTGC ACCAGATCAG CCGGCGGCAC
GACAAGCCGT TCATCGCGAT CAACTGCGCG GCCATCCCCG AGACGCTGGT GGAGGCGGAG
CTGTTCGGGG TCGAGCGCGG CGCCTACACC GGCGCCACGC ATTCGCGCGC CGGCCGCTTC
GAGCTGGCAC ACGAAGGCAC CCTGTTCCTG GACGAGATCG GCACCCTGAG CCTGGTGGCC
CAGGGCAAGC TGCTGCGCGC GCTGCAGGAA GGCGAATTCG AGCGCGTCGG CTCCAGCCGA
TCGCTCAAGG TCGACACGCG CGTGGTGGCC GCCACCAACG AAGACCTGCC GCAGGCCGTG
CGCGCAGGGC GCTTTCGCCA GGACCTGTTC TTCCGCCTCA ACGTGTTCCC CATCCACCTG
CCGCCGCTGC GCGAGCGGCG CGACGACATC CCGCTGCTCA TGAGCCACTT CCTCAAGAGC
TACGCGCACA AGCACGGCCT GGCCGTGCGC GGCTTCAGCC CCCGCGCGAT CAAGGCCCTG
CTCAACTACA GCTTTCCCGG CAATATCCGC GAGCTGCAGA ACCTGGTGGA GCGGGGCGTG
ATCCTGGCGC AGGCGGAGCT GGTGGACCTG CCGCACATGT TCATCAGCGG CGAGACGCTC
GACCAGGAAG TGCTGTCCCT GGCGATGGCC GGCGAGGTGG GCACGCTGAC GCACGGACGC
GAAGCATCGG CGGCCTCGGC GACATCGACC GCCCCGCCCT ATCCGGCCAC GCTGCTGGAG
CTGGTGCACG ACTGGGGCCG GCAGACGCAG GGCGCCGCCG TCTCGCTGCC GGCGCTGGAA
CAGCGGCTGC TGGAAGAAGC CGTGCAGCGG GCCAACGGCA ACCTGTCGTC GGCGGCGCGC
ACGCTGGGCA TCACGCGGGC CCAACTGGCC TACCGGCTGC AGCGGCGCGG GGCGGATGCC
CCGGACCACT GA
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| Protein sequence | MAPLPRISLA EVARTTGTVL SPAGSDRWSA DSQPTLADIS ECLYFSPGDG RIWLNDQRML
LLHSRAMGTL RRELIDSLGI DRARGLLTRS GYVSGAHDAR LVRERWPDAE PSAILIAGTR
LHTLEGMVKV VPVSFSYAPE SGRYQGEFLW HNSSEDDEHL EAYGVGTAPA CWRQLGYAIG
YVSTLLGHLV IFREVECRAM GAGVCRVIGK SAELWDDASE DLRYLNAQDF VDSGMLAASA
PEPDQPRSAA PPSGPDRPPE AHDAQDSAAP ALVGASSAFN AACHLLRRVA PTDATVLFTG
ESGVGKERFA RMLHQISRRH DKPFIAINCA AIPETLVEAE LFGVERGAYT GATHSRAGRF
ELAHEGTLFL DEIGTLSLVA QGKLLRALQE GEFERVGSSR SLKVDTRVVA ATNEDLPQAV
RAGRFRQDLF FRLNVFPIHL PPLRERRDDI PLLMSHFLKS YAHKHGLAVR GFSPRAIKAL
LNYSFPGNIR ELQNLVERGV ILAQAELVDL PHMFISGETL DQEVLSLAMA GEVGTLTHGR
EASAASATST APPYPATLLE LVHDWGRQTQ GAAVSLPALE QRLLEEAVQR ANGNLSSAAR
TLGITRAQLA YRLQRRGADA PDH
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