Gene RS04812 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRS04812 
SymbolRSp1535 
ID1223847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp1922238 
End bp1923989 
Gene Length1752 bp 
Protein Length583 aa 
Translation table11 
GC content69% 
IMG OID637241398 
Productactivation/secretion signal peptide protein 
Protein accessionNP_523094 
Protein GI17549754 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.191028 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGTGA AACCTTTCTC GCTGGCAGCG GCATTGCTGT GGGCAATGGC CGCCCAGGCA 
CAAGTTCCTC CACCCGCGCC ACCGGGTCCG GTGCTCGAAG ACCCGGCCCA GCGCGCCCTG
CGCGAGCGTC AGGACACCGA GCGCCGCCGC GAGGCCACGC AGCCCGCGCC GCAGATTGCC
GTCGCGCCGT CGGTGCCCGA TGACGCCGCC GTCGATGCGG TGGTCGAGCC GGACACGACC
TTCGACATCC ACCGCATCGA GCTGACCGGC AACACGGTGC TGGATGCCGA CACCGTCGAA
CGTGTCACGC AGCCGTTCCT GAACCGTGCG CTCGGCACCA ACCGCATCAA CCTGCTGCTG
CGCCGGCTGA CCGAAGCGTT CATCGCGCAC GGCTTCGTCA CCACGCGCGC TTACCTGGCG
CCGCAGAACC TCAAGGTGGG CGTGCTGACC ATCGCCGTGG TGCCTGGCAA GGTCGAGGCG
CTGCAGATCA ACGGCAAGAC GGTCCGTACC ACGGTGCCCG ATGCCAAACT GGCCGAAGGA
CCGCAGGCCG GCGGCTGGCT GACCGATGCC GGCACCGTGT GGTCGATGCC GGCGGTGGGC
GACACGCTCA GGCTGTCCGA TCTGGAGCAG GGCGTCGACC AGATCAACCG CCTGCGCCGC
AACCAGGCCG AGGTGCAGAT CCTGCCGGGC CAGGCGCCGG GCGGCTCCGT GATCGCGCTG
GCCAACCAGC CGGGCGACCG CTTCCGCTTC AGCGCCGGCA CCGACAACTA CGGCAGCCGC
GCCACCGGCA CCACGCGCCT GCGCGCTGGC ATCGACGCGG ACAACGCGCT CGGCTTCCAG
GAAGCCGTGT CGCTGTCGTA CATCGGCACG CGCGACACCA ACGCGGCCAT CGTCTCGGCG
GCCGTGCCGT TCGGCTACAA CACCTTCAGC TATACCGGCT CGCTGTCGGA GTACAACAGC
CTGATCGGCG ATACCGCGCT GCTCTACGGT CGCACGTTCG CGCATGCCTT CGGCTGGAAC
CGCGTGATCG AGCGCGACCC GGGCGGCCGC ACCGCGTTCG ATGTCACACT CACGCACCGG
CGCAGCGAGC GCGAGGTCAA CAACCTGCTG TTCGAGCCGC AGAGCCTGTC GGTGCTGCGC
GTGGCCGTCA ACGGTCTGCG CAAGTTCGCC GTCGGCAACC AGGGCGGCTA TGCGACCTGG
GAGGCGGGGC TATCACGCGG CATGGACGCG CTCAATGCGA GTCACGACGC ACCGGACATC
ACGCGCGACG AGGCGCACAG CCAGTTCTGG AAGCTGGACG GCAACGCCAG CACCCAACTG
CCGCTTCCCG CCATCGGCCG CGCCGCGCTG GCCTACCGTG GGCAGGTGTC GGCGCAGTGG
TCGAACGTTG CGCTGTTCGG CTCCGAGCAG ATCTTTGCCG GCGGCATGGG CTCGGTGCGC
GGCTTCCGCG AGGGGCTGAT CAGCGGCGAT CGCGGCCTGA CGCTGCGCAA CGAAGTGGTG
TGGGGCAACG TGCCCGTGCT GGCCGGCGTG CGCATCGAGC CCTATGTCTT CCTGGACGGC
GGACAGACGC AGCTGGTGGC GAACCAGCAC TGGCAGTACC TGGCCGGCAC CGGCATGGGC
GTGCGGCTGG CCGCGAATGC CGGCAAGCAT GCCTTCACCA GCGAGCTGCT GCTCGGCCGC
GCGCTGGTGC AACCCGCGGA ACTTGGCAGC AAGGCAACGG TCTTGCTGGC CACAATGAAC
TACTCGTTTT AG
 
Protein sequence
MRVKPFSLAA ALLWAMAAQA QVPPPAPPGP VLEDPAQRAL RERQDTERRR EATQPAPQIA 
VAPSVPDDAA VDAVVEPDTT FDIHRIELTG NTVLDADTVE RVTQPFLNRA LGTNRINLLL
RRLTEAFIAH GFVTTRAYLA PQNLKVGVLT IAVVPGKVEA LQINGKTVRT TVPDAKLAEG
PQAGGWLTDA GTVWSMPAVG DTLRLSDLEQ GVDQINRLRR NQAEVQILPG QAPGGSVIAL
ANQPGDRFRF SAGTDNYGSR ATGTTRLRAG IDADNALGFQ EAVSLSYIGT RDTNAAIVSA
AVPFGYNTFS YTGSLSEYNS LIGDTALLYG RTFAHAFGWN RVIERDPGGR TAFDVTLTHR
RSEREVNNLL FEPQSLSVLR VAVNGLRKFA VGNQGGYATW EAGLSRGMDA LNASHDAPDI
TRDEAHSQFW KLDGNASTQL PLPAIGRAAL AYRGQVSAQW SNVALFGSEQ IFAGGMGSVR
GFREGLISGD RGLTLRNEVV WGNVPVLAGV RIEPYVFLDG GQTQLVANQH WQYLAGTGMG
VRLAANAGKH AFTSELLLGR ALVQPAELGS KATVLLATMN YSF