Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS04812 |
Symbol | RSp1535 |
ID | 1223847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1922238 |
End bp | 1923989 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637241398 |
Product | activation/secretion signal peptide protein |
Protein accession | NP_523094 |
Protein GI | 17549754 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.191028 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGTGA AACCTTTCTC GCTGGCAGCG GCATTGCTGT GGGCAATGGC CGCCCAGGCA CAAGTTCCTC CACCCGCGCC ACCGGGTCCG GTGCTCGAAG ACCCGGCCCA GCGCGCCCTG CGCGAGCGTC AGGACACCGA GCGCCGCCGC GAGGCCACGC AGCCCGCGCC GCAGATTGCC GTCGCGCCGT CGGTGCCCGA TGACGCCGCC GTCGATGCGG TGGTCGAGCC GGACACGACC TTCGACATCC ACCGCATCGA GCTGACCGGC AACACGGTGC TGGATGCCGA CACCGTCGAA CGTGTCACGC AGCCGTTCCT GAACCGTGCG CTCGGCACCA ACCGCATCAA CCTGCTGCTG CGCCGGCTGA CCGAAGCGTT CATCGCGCAC GGCTTCGTCA CCACGCGCGC TTACCTGGCG CCGCAGAACC TCAAGGTGGG CGTGCTGACC ATCGCCGTGG TGCCTGGCAA GGTCGAGGCG CTGCAGATCA ACGGCAAGAC GGTCCGTACC ACGGTGCCCG ATGCCAAACT GGCCGAAGGA CCGCAGGCCG GCGGCTGGCT GACCGATGCC GGCACCGTGT GGTCGATGCC GGCGGTGGGC GACACGCTCA GGCTGTCCGA TCTGGAGCAG GGCGTCGACC AGATCAACCG CCTGCGCCGC AACCAGGCCG AGGTGCAGAT CCTGCCGGGC CAGGCGCCGG GCGGCTCCGT GATCGCGCTG GCCAACCAGC CGGGCGACCG CTTCCGCTTC AGCGCCGGCA CCGACAACTA CGGCAGCCGC GCCACCGGCA CCACGCGCCT GCGCGCTGGC ATCGACGCGG ACAACGCGCT CGGCTTCCAG GAAGCCGTGT CGCTGTCGTA CATCGGCACG CGCGACACCA ACGCGGCCAT CGTCTCGGCG GCCGTGCCGT TCGGCTACAA CACCTTCAGC TATACCGGCT CGCTGTCGGA GTACAACAGC CTGATCGGCG ATACCGCGCT GCTCTACGGT CGCACGTTCG CGCATGCCTT CGGCTGGAAC CGCGTGATCG AGCGCGACCC GGGCGGCCGC ACCGCGTTCG ATGTCACACT CACGCACCGG CGCAGCGAGC GCGAGGTCAA CAACCTGCTG TTCGAGCCGC AGAGCCTGTC GGTGCTGCGC GTGGCCGTCA ACGGTCTGCG CAAGTTCGCC GTCGGCAACC AGGGCGGCTA TGCGACCTGG GAGGCGGGGC TATCACGCGG CATGGACGCG CTCAATGCGA GTCACGACGC ACCGGACATC ACGCGCGACG AGGCGCACAG CCAGTTCTGG AAGCTGGACG GCAACGCCAG CACCCAACTG CCGCTTCCCG CCATCGGCCG CGCCGCGCTG GCCTACCGTG GGCAGGTGTC GGCGCAGTGG TCGAACGTTG CGCTGTTCGG CTCCGAGCAG ATCTTTGCCG GCGGCATGGG CTCGGTGCGC GGCTTCCGCG AGGGGCTGAT CAGCGGCGAT CGCGGCCTGA CGCTGCGCAA CGAAGTGGTG TGGGGCAACG TGCCCGTGCT GGCCGGCGTG CGCATCGAGC CCTATGTCTT CCTGGACGGC GGACAGACGC AGCTGGTGGC GAACCAGCAC TGGCAGTACC TGGCCGGCAC CGGCATGGGC GTGCGGCTGG CCGCGAATGC CGGCAAGCAT GCCTTCACCA GCGAGCTGCT GCTCGGCCGC GCGCTGGTGC AACCCGCGGA ACTTGGCAGC AAGGCAACGG TCTTGCTGGC CACAATGAAC TACTCGTTTT AG
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Protein sequence | MRVKPFSLAA ALLWAMAAQA QVPPPAPPGP VLEDPAQRAL RERQDTERRR EATQPAPQIA VAPSVPDDAA VDAVVEPDTT FDIHRIELTG NTVLDADTVE RVTQPFLNRA LGTNRINLLL RRLTEAFIAH GFVTTRAYLA PQNLKVGVLT IAVVPGKVEA LQINGKTVRT TVPDAKLAEG PQAGGWLTDA GTVWSMPAVG DTLRLSDLEQ GVDQINRLRR NQAEVQILPG QAPGGSVIAL ANQPGDRFRF SAGTDNYGSR ATGTTRLRAG IDADNALGFQ EAVSLSYIGT RDTNAAIVSA AVPFGYNTFS YTGSLSEYNS LIGDTALLYG RTFAHAFGWN RVIERDPGGR TAFDVTLTHR RSEREVNNLL FEPQSLSVLR VAVNGLRKFA VGNQGGYATW EAGLSRGMDA LNASHDAPDI TRDEAHSQFW KLDGNASTQL PLPAIGRAAL AYRGQVSAQW SNVALFGSEQ IFAGGMGSVR GFREGLISGD RGLTLRNEVV WGNVPVLAGV RIEPYVFLDG GQTQLVANQH WQYLAGTGMG VRLAANAGKH AFTSELLLGR ALVQPAELGS KATVLLATMN YSF
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