Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS03929 |
Symbol | RSp0550 |
ID | 1222857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 690842 |
End bp | 692614 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637240410 |
Product | activation/secretion signal peptide protein |
Protein accession | NP_522111 |
Protein GI | 17548771 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.217288 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACA AGAAAAAATC ACTGCCGATC GCACTGGGCG CTATCGGCCT TCTGATGTCG TCTCATCCAG CCGGCGTCTC CGCACAAACA CCCCCCACCC AATCGGCCGC CACCGCAGCC GCCAACACCG AACAGGAACA ACGCCTCCGC CAGCAACAAC AAGCCCGCGA ACGCGAACAA GCCGTGCAGG CCCCCGCAGT CCGCGCCCAG CAAGCCGCAC CAGCCGAGTT CCCCGACATC CCCACCGAAA CACCCTGCTT CCGCATCAAC CGTTTCGCAC TGGAGGTCCC GCAGGACTTG CCCGAGGCCG CCCGTATCAA GGGCGCCTCT GCTTTGCCCC AAGACCCCTT CGCCTTCGCC CAGGCATGGC TTGACCACTA CAACAGCACC TGCATCGGCA AACAAGGCGT GGACCTGCTC ACCAAGGGAG TCTCGCAAGC CATCCTGAGC CGGGGCTATG TGACCACGCG CGTACTGCTG CCCCAGCAGG ACCTGAGCAC CGGCACGCTG CGCTTCGTCC TGGTGCCCGG CATGATCGGC CAGATCCGTT TCGCGCAGGC CGATGTGCGG GGCACCTGGA AATCCGCCTT CCCCTCACGC CCGGGCGACC TGCTGAACCT GCGCGACCTC GAACAGGGCC TGGAGCAAAT GAAGCGCGTC GCCAGCCAGG ACGTCGACAT GCAGCTCGTG CCCACGGACG TGCCGGGCGT GAGCGATGTG GTGATCTCGG TCAAGCGCAC CAAGCCCTGG ACGGTCGTCG CTGCGGTAGA CAATTCCGGC ACGCGCTCGA CCGGCAAGCT GCAAGGCAAC CTGAGCCTCA GCCTCGACAA CCCGCTGGGC CTGAACGACC TGTTCAACGT GGGCTACAGC CAGGACCTGG ATTTCAGCAA CAAGGAACAT GGCACCCACG GCTGGAACGG CTTCTACTCG GTGCCGTGGG GGTACTGGAC GGCGACGGTG TCAGCGTATT CCAGCACCTA CTTCCAGCAG ATCGCCGGCG TCAACCAGAC CTTCGTGTCG AGCGGCAATT CGCAGAACTT CGATATCAAG CTGCAGCGCG TCATCGAGCG CTCGCAGAAC GACGTGCTGG GGGTGCAGTT CCGCCTGTCC AAGCGGTTCG GCAAGAACTT CGTCGACGAC ACCGAGATTC CCCAGCAGCG GCGCAACAAC ACGGTGGTGG AAACCGGCCT GACGGATCGC CACTACTTCG GGGCCGCGCA GTTCGACGGC AGCCTGCTGC TGCGCCACGG CGTGGGCGAC CTGGGCGCGC AGGACGACAC GCTGGCCGAT GGCGGTGGCC CGACCTGGCA CTATCGCATG CTGGTGGCGG ATGCCAACCT GTCGGTGCCG TTCAAGGTGG GGACGCAGCC GCTGCGGTAT GTGACCACGT TCCGTGGACA GTTCACCAAC GACCATCTGT ATTCGATCGA CGCGATCACC ATCGGCAGCC GCTACACCGT GCGGGGCTTC GATGGCGAGA TGTCGCTTGT CGGCGATCGG GGTTTCTACT GGCGCAATGA GCTGCAAGCG CCGATCGGCA ACACCGGCCT GTCGCTCTAT GGCGGTCTCG ACTACGGCCA TGTCTATGGC CCGTCGACGG TGGGCTTGGC GGGCACCCAA CTGGCGGGTG CCGTGATCGG GCTGCGCGGT GGATGGGGGA CGCGGGCCGG TTCGTTCTCT TATGACCTGT TCGCCGGCAC GCCGGTCTAT AAGCCTGCGG CGTTCCAAAC TGCCCGGGTG ACAGCGGGCT TTCAATTGAT CTATCAATAC TGA
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Protein sequence | MKHKKKSLPI ALGAIGLLMS SHPAGVSAQT PPTQSAATAA ANTEQEQRLR QQQQAREREQ AVQAPAVRAQ QAAPAEFPDI PTETPCFRIN RFALEVPQDL PEAARIKGAS ALPQDPFAFA QAWLDHYNST CIGKQGVDLL TKGVSQAILS RGYVTTRVLL PQQDLSTGTL RFVLVPGMIG QIRFAQADVR GTWKSAFPSR PGDLLNLRDL EQGLEQMKRV ASQDVDMQLV PTDVPGVSDV VISVKRTKPW TVVAAVDNSG TRSTGKLQGN LSLSLDNPLG LNDLFNVGYS QDLDFSNKEH GTHGWNGFYS VPWGYWTATV SAYSSTYFQQ IAGVNQTFVS SGNSQNFDIK LQRVIERSQN DVLGVQFRLS KRFGKNFVDD TEIPQQRRNN TVVETGLTDR HYFGAAQFDG SLLLRHGVGD LGAQDDTLAD GGGPTWHYRM LVADANLSVP FKVGTQPLRY VTTFRGQFTN DHLYSIDAIT IGSRYTVRGF DGEMSLVGDR GFYWRNELQA PIGNTGLSLY GGLDYGHVYG PSTVGLAGTQ LAGAVIGLRG GWGTRAGSFS YDLFAGTPVY KPAAFQTARV TAGFQLIYQY
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