| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03744 |
|---|
| Symbol | RSp0623 |
|---|
| ID | 1222930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 754466 |
|---|
| End bp | 756070 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637240483 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | NP_522184 |
|---|
| Protein GI | 17548844 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG2082] Precorrin isomerase
[COG2138] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.937216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCA CCAACGCATC CACCTCCACC CACGGCGCCG ACTACGCCAT CGTCCTGGCC
GGCCACGGCA GCCGCGACCC CGACGGCGTG GCGGAATTCC TGGCCCTGGT GGCGCTGCTG
CGCGAGCGCG CGGGCGGTCG CACCGTCGCG CACGGGTTCC TTGAATTCGC CACGCCCACC
CTCGACGAAG CGGTCGATGC CGTGGTGGCC GACGGCGCCG GGACGGTGGT GATGGTGCCC
GGCGTGCTGC TGGCCGCCAC GCACGCCAAG AACGACATGC CGAGCGAACT GCTGGCGCTC
AAGCAGGCCC ATCCCCAGGT CGATTTCCGC TTCGGCGCGG CGATGGACCT GCATCCCAAG
CTGCTCGCGC TGTGCCGCGA GCGCATCGTC GAGGCCGAGG GCCGCTCGGC GCAGACCGTG
TCGCGCGCCG ACACCTGCCT GGTGGTGGTC GGGCGCGGCA CGTCGGACCC CGACGCCAAC
TCCGAGATCG CCAAGCTGAC GCGCATGCTG GAAGAGGGCA TGGGCTTCGG CACCGCCTTC
GTCTGCTATG CCGGCACCGC GCGCCCGCTG GTGGCCGATG GCCTGAAGGC CGCCGCTCGG
CTCGGGTACC GGCGCATCGT CGTGCTGCCG TATTTCCTGT TCGACGGCGT GCTGGTCAAG
CGCATCTACG GTGCCGCCAA CGACCTGGCC GCGCGCCATC CGGAGATCGA GGTGCTGCGC
GCGCCGTACC TGGGCGTGCA CCCGCACGTG GCGGACGTGT TCCTGGAGCG TGCCCGCGAG
GGCATCGAGG GCCGCGCGGC GATGAACTGC GCGCTGTGCA AGTACCGCGT GCAGATCGTC
GGCTTCGAAG AGCAGGTCGG CACGCCGCAG CAGAGCCATC ACGGACTGGT GCGCGGGCTG
CTGGGTCGCG ACGGCGCCAC GCCCGCGCCC GCCGCCGACT GGCCACCCTA CGTGCCGCAC
CCGATCGAGG CCGAGAGCAT GCGCATCATC GACGCCGGGC GCGACTGGTC CGGCGTGCCA
GCCGACCATC AGATCGTGCT CAAGCGGCTG GTGCACACCA GCGGCGATTT CGACATCGTC
GATGACCTGT ATTTCTCGCC CGGCGCGGTC GAGACCGGCA TCCGCGCCCT GCTGCGCTGC
CGTCGCATCG TCGCCGATGT CACCATGGTG CAGACGGGCC TCAAGCGCGC GGTGCTCGAC
CAGTTGGGCG TGCAGACCTG GTGCGGCGTG CACGACGAAG AAACGCGCCT GCTGGCCGAG
GCGCACGGCA TCACCCGCTC GGCCGCCGGC ATCCGGCGCG CCTGGCAGCG GTTCGGCAAC
GACGTGGTGG TCGCCATCGG CGACGCGCCG ACCGCCATCG TGGAGCTGGT GCGGCTGGTG
CGCGAGCAGG GCTGGCGCCC GCAACTGGTG GTGGGGCTGC CGGTGGGCTT CGTCGGCACG
CGCGAGAGCA AGGAGGCGCT GCGCCGGCTG ATGCAGGTGC CGCGCATCAC CAACCGCGGC
ACGCGCGGGG GCTCGCCATG GGCGGCCTCG GCGGTGAACG CGCTGATGAT TGCCGCCATC
GATCAGGTCT ACCGCCAAAA CCAATCCCTG CCGCAGCAGG CCTAA
|
|---|
| Protein sequence | MTTTNASTST HGADYAIVLA GHGSRDPDGV AEFLALVALL RERAGGRTVA HGFLEFATPT
LDEAVDAVVA DGAGTVVMVP GVLLAATHAK NDMPSELLAL KQAHPQVDFR FGAAMDLHPK
LLALCRERIV EAEGRSAQTV SRADTCLVVV GRGTSDPDAN SEIAKLTRML EEGMGFGTAF
VCYAGTARPL VADGLKAAAR LGYRRIVVLP YFLFDGVLVK RIYGAANDLA ARHPEIEVLR
APYLGVHPHV ADVFLERARE GIEGRAAMNC ALCKYRVQIV GFEEQVGTPQ QSHHGLVRGL
LGRDGATPAP AADWPPYVPH PIEAESMRII DAGRDWSGVP ADHQIVLKRL VHTSGDFDIV
DDLYFSPGAV ETGIRALLRC RRIVADVTMV QTGLKRAVLD QLGVQTWCGV HDEETRLLAE
AHGITRSAAG IRRAWQRFGN DVVVAIGDAP TAIVELVRLV REQGWRPQLV VGLPVGFVGT
RESKEALRRL MQVPRITNRG TRGGSPWAAS AVNALMIAAI DQVYRQNQSL PQQA
|
|---|
| |