| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03722 |
|---|
| Symbol | RSp0244 |
|---|
| ID | 1222375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 315864 |
|---|
| End bp | 318089 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637240103 |
|---|
| Product | outer membrane hemin receptor signal peptide protein |
|---|
| Protein accession | NP_521805 |
|---|
| Protein GI | 17548465 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000281288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0836882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCG CCGCGCTGCT GTGCGCGCCG GCGGCGGGTG CCGAACCGTC CCCCCCCGCC
TACGCCCCGG TGCTGGCGAC ACGCGCCGAC CTGACGCTGG ACCCGGTCAT CGTCACCGCC
ACGCGGTCGC GGACGGCGTT GAGCCGCACG CCGGCCAGCG TCTCGGTGAT CACCGACACC
GATCTGGAGG AACAGCAGGC CGACAACATC AAGGAAGCGC TGCGCTACGA ACCGGGCGTG
ACCGTGCGCC GCAGCGCGTT CCGGCCGACA TCGGCGGCGT CCAGCGGATC GGCCGGCGGC
TTTGGCGGCA ACCAGGGCAT CAACATTCGC GGGCTGGACG GCAACCGCAT CCTGCTGATG
GAAGACGGCA TCCGCCTGCC GGCCGCCTTT GCCTATGGGC CGCTCAATGC CGGCCGCGGC
GACTACGCCG ACATGGCGCT GCTGCGCAGC ATCGAGATCC TGCGCGGGCC GGCCTCGTCG
CTGTACGGCA GCGACGGGCT GACCGGCGCA GTCAATTTCC TCACCAAGGA CCCGCAGGAT
CTGCTGGACG TGTTCGGCAA GGCGTCGTAT TTCGGGCTGC GCTCGGGCTA TGACTCGACC
GATCGCAGCT TCGGCACCAC GGTTTCCACC GCCCTGGGCG GCGAACGGTT CCAGGGGATG
CTGATCGCCG ACGGCCGGCG CGGACACGCT GTCGACAACC AGGGCAGCAA CGGCAGCGCG
GGGGCGGCCC GCACCACGCC CAACCCGCAG GACACCGATA ACACCGCGCT GCTCGGCAAG
CTGGTGTTCA AGGCCACGGC CCGCGACACC TTGAAGCTGA CCGGCGAATC GGTGCGCCAG
CGCATCGACA GCGACGCGCT GTCGGCCGTC ACCCCGACGC TGCGCAGCCT GCGCTCGGCC
GACCGGCTGG AGAGCCAGCG TGTCAGCCTC GACTACGACC ATGCCGACGC CGGCAACCGC
TGGTTCCAGA ACGCCCATGC CCTGGTCTAC TTCCGCCGCG CCGAGATCGG GCAAGCGCAG
GACGAGATCA GCGTCGCCTC GCAGCGCTCG CGCAACAACC ACTACCGCGA CCACACCTTC
GGCCTGTCGT CGCAACTGGA AAGCAACTTC CGCACAGGTT CGCTCTCGCA CAAGCTCGTG
TACGGCGCGG ACGCCAGCTT CTCGCGCATC GACAGCGACC GCTCGGGCAC CGGGCCGGCG
GCGTCCGACA ACTTCGTCAA CAAGGTCTTC CCCGACACCG GATACGCGCT GCTGGGCGCC
TTCGTGCAGG ATGAGATCCG CCGCGGCAGC CTGAGCGTCA TTCCGGCCCT GCGCTACGAC
ACATACCGGC TGAAGCCGCG CAACCCGGGC GATCCGCTCT ACACCGGCGT GCAGGCGGGC
AGCAGCGACG GTGCGCTGTC GCCCAAGCTG GCGCTGATGT ATGCCTTCGC GCCGGCCGCC
ACCGCCTACG TGCAATACGC GCGCGGCTTC CGCACGCCGA CACCCGACCA GGTCAACAAC
GGCTTCACCA GCACCGCCGG TTCGCGCGTG TACTACCGCA GCATCGGCAA CCCCCGCCTG
AAGCCGGAGA CCAGCGACAC GGTGGAAGTG GGCCTGCGCG GCAAGCTCGA TACCACGCGG
GGCCGCATCG CATACAGCGT GGCCGCCTTT GCCGGGCGCT ACCGCAACTT CATCGATCAG
GTGACGGTCG GCGGCAGCAT CACCAGCCCG ACCAACCCGC TGACCTATCA GTACGTCAAT
GTCAGCCGCG CGTTCATCCG CGGCGTGGAG GCGCGCGGCG AATGGCGGCT GCCGGCCGGC
GTGAAGCTGC GCGCGGCGGC GGCCTATACG CGCGGCACGG CCGAAGACGC CGGCGGCGCT
ACCACGCCGC TCAATAGCAT CAACCCGCTG CAGGCTGTGT TCGGCGTGCG CTACGAGCCC
GGCGAGCGCT GGTTCGCGCA GACCGACATG ACCTGGCAGA TGGCCAAGAG CCCGAGCACC
ATCCGCCCGC CCGGCACCGG CGCCACGGCC GACTTCGCGA CGCCGTCGTC GCTCGTGGTG
GATGTGGCGG GCGGCTACCG GCTGAACAAG CACGCCTCGC TCTACCTGGC CGTGCGCAAC
CTGTTGGACC GCAAGGTGTG GAACTGGTCG GACGTGGCGG GCCTGGGCCT GGCCGGCTCG
ACCGCCCTCG ACGCCTACAC CGCGCCCGGA CGCACCTTCG CGGCCACCGT GAAGATCGAG
TTCTGA
|
|---|
| Protein sequence | MTAAALLCAP AAGAEPSPPA YAPVLATRAD LTLDPVIVTA TRSRTALSRT PASVSVITDT
DLEEQQADNI KEALRYEPGV TVRRSAFRPT SAASSGSAGG FGGNQGINIR GLDGNRILLM
EDGIRLPAAF AYGPLNAGRG DYADMALLRS IEILRGPASS LYGSDGLTGA VNFLTKDPQD
LLDVFGKASY FGLRSGYDST DRSFGTTVST ALGGERFQGM LIADGRRGHA VDNQGSNGSA
GAARTTPNPQ DTDNTALLGK LVFKATARDT LKLTGESVRQ RIDSDALSAV TPTLRSLRSA
DRLESQRVSL DYDHADAGNR WFQNAHALVY FRRAEIGQAQ DEISVASQRS RNNHYRDHTF
GLSSQLESNF RTGSLSHKLV YGADASFSRI DSDRSGTGPA ASDNFVNKVF PDTGYALLGA
FVQDEIRRGS LSVIPALRYD TYRLKPRNPG DPLYTGVQAG SSDGALSPKL ALMYAFAPAA
TAYVQYARGF RTPTPDQVNN GFTSTAGSRV YYRSIGNPRL KPETSDTVEV GLRGKLDTTR
GRIAYSVAAF AGRYRNFIDQ VTVGGSITSP TNPLTYQYVN VSRAFIRGVE ARGEWRLPAG
VKLRAAAAYT RGTAEDAGGA TTPLNSINPL QAVFGVRYEP GERWFAQTDM TWQMAKSPST
IRPPGTGATA DFATPSSLVV DVAGGYRLNK HASLYLAVRN LLDRKVWNWS DVAGLGLAGS
TALDAYTAPG RTFAATVKIE F
|
|---|
| |