| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03144 |
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| Symbol | RSp1200 |
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| ID | 1223512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1526796 |
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| End bp | 1528322 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637241065 |
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| Product | putative outer membrane CHANEL lipoprotein transmembrane |
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| Protein accession | NP_522761 |
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| Protein GI | 17549421 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.330645 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGAG GCACCCACGC CCTCCGACCC TCCCCGCTGC TGCTGCGCGC GATGGCGCTG
GCCGCCTGCG CGCTGATGAC GGCCTGCGCC GTCGGCCCCG ACTACAAGCG CCCGTCGGCC
GACGTGCCGC AGCAGTACAA GGAAACCGCA GGAGACTGGA AAGTCGGCAC CCCGAGCGAT
GCCATCACCC GCGGCAAATG GTGGGAGATC TTCGGCGACG CGCAGCTCAA CGCGCTCGAA
GAGCAGGTGG CCGCCGCCAA CCAGAACATC CTGGTGGCCG AGGCGCAATA CCGCCAGGCA
CAGGCGCTGG TGCAGTCGGC GCGCGCGCAG TTCTTCCCGA CCATCAGCGC GAGCGCCTCG
GCCAGCCGCA GCCGCTCGGT GCGCACCACC ACCAATGCCG ACGGCAGCCT GTCCACCGGC
TCGCCGAGCA TCACCAACAC CCAGAGCCTG ACGCTCGACG CCAGCTGGGA GCTGGACCTG
TGGGGCCGCA TCCGCCGCAC GGTGGAGTCC AACAAGGCCA GCGCCGAAGC CAGCGCCGGC
GACCTGGCCT CGGCGCTGCT CTCGGCCCAG GCGACACTCG CGCAGGATTA CTTCCAGTTG
CGGGTCACCG ATACGCAGAA GGCCGTCCTG CGGCGCACCG TGGCCGACTA CGAGCGCTTC
CTGCAGCTGA CGCAGAACCA GTACGCGGTC GGCGTGGCGC AGCGCTCCGA CGTGCTCACC
GCGCAGACGC AGCTCAAGCA GACCCAGGCG CTGCTGCTCG ACGCCGAGGT CACGCGGGCG
CAGCTGGAGC ACGCGATCGC CGTGCTGATC GGCAAGTCGC CCTCGGCGTT CTCCCTGGCG
CCGGTCAGCG CCGCGACCGC GCAGGAACTG CCGCCGCTGC CCGACATTCC GCTCGAGATC
CCGTCGACGG TACTGGAGCG CCGGCCCGAC ATCGCCGCGG CCGAACGGCG CGTGGCGCAG
GCGAATGCCA ATATCGGCGT CGCCAAGGCA GCCTATTTCC CGACCCTCAC GCTGGGCGCC
TCCGCCGGCT TGTCGGCCAA TACGCTGTCG CGGCTGGCAA CGCTGCCCAG CCGCATCTGG
TCGATCGGCC CGACGCTGGC CGCCACCCTG TTCGAGGGCG GCGCCCTCAA CGCGGCGGTG
AACAAGGCCG GCGCCGCCTA CGATGCGGCC GTCGGCACCT ACCGCCAGAC CGTGCTCGGC
GCCTTCCAGG ACGTCGAGGA CAACCTCGCC GCGCTGCGCT GGCAGGCCCA GGAATTCGAC
GTGCAGAACG ATGCCGTCCA ATCCGCCCAG GAAGCGGCCC AGCTCGACCT CAACCGCTAC
CGCGCGGGCA CCATCAGCTT CCTCGAAGTC ATCACCGCCC AGGCCACCGC CTACACCGCG
GAACGAACGC TGCTGACGCT GCAGGGCAAG CGCTATTCGG CCGCCGTGCT GCTGGTCAAG
GCGCTGGGCG GCGGCTGGCA TGGCGAAGTC CCGGCGGTGG GCCCGGCCGC CGCCCGGGCG
GCCTCCGCCA CCGCGCCCGC GCAATAG
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| Protein sequence | MTRGTHALRP SPLLLRAMAL AACALMTACA VGPDYKRPSA DVPQQYKETA GDWKVGTPSD
AITRGKWWEI FGDAQLNALE EQVAAANQNI LVAEAQYRQA QALVQSARAQ FFPTISASAS
ASRSRSVRTT TNADGSLSTG SPSITNTQSL TLDASWELDL WGRIRRTVES NKASAEASAG
DLASALLSAQ ATLAQDYFQL RVTDTQKAVL RRTVADYERF LQLTQNQYAV GVAQRSDVLT
AQTQLKQTQA LLLDAEVTRA QLEHAIAVLI GKSPSAFSLA PVSAATAQEL PPLPDIPLEI
PSTVLERRPD IAAAERRVAQ ANANIGVAKA AYFPTLTLGA SAGLSANTLS RLATLPSRIW
SIGPTLAATL FEGGALNAAV NKAGAAYDAA VGTYRQTVLG AFQDVEDNLA ALRWQAQEFD
VQNDAVQSAQ EAAQLDLNRY RAGTISFLEV ITAQATAYTA ERTLLTLQGK RYSAAVLLVK
ALGGGWHGEV PAVGPAAARA ASATAPAQ
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