Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS03143 |
Symbol | RSp1199 |
ID | 1223511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 1523692 |
End bp | 1526793 |
Gene Length | 3102 bp |
Protein Length | 1033 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637241064 |
Product | drug efflux transmembrane protein |
Protein accession | NP_522760 |
Protein GI | 17549420 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGT CCGCCACCTT CATCGCCCGG CCGGTCGCCA CCGCGCTGCT GACCATCGGC GTGGCGCTGG CCGGCATCGC GGCGTTCAAC CTGCTGCCGG TGTCGCCGCT GCCGCAGGTG GACTTCCCCA CCATCTCGGT CAACGCATCG CTGCCCGGCG CCAGCCCCGA GACCATGGCC GCCACCGTGG CGACGCCGCT GGAGCGCTCG CTCGGCCGCA TCGCCGGCAT CACCGAGATG ACCTCGCAGA GCGCGCTGGG CTCGACGCGC GTGACGCTGC AGTTCGACCT GTCGCGCGAC ATCGACGGCG CGGCGCGCGA CGTGCAGGCC GCCATCAACG CCTCGCGCAG CCTGCTGCCC TCGGGCCTGC CGAGCAACCC GACCTACCGC AAGGTCAACC CGGCCGACGC GCCGATCATG ATCCTGGGGC TGACCTCCGA CACCAAGTCG CGCGGCGAGC TGTACGACGC GGCCTCGACC ATCCTGGCGC AGAAGCTGTC GCAGATCACG GGCGTGGGGC AGGTCAACAT CGGCGGCGCA TCGCTGCCGG CGGTGCGGGT GGAGCTGAAC CCGACGGCAC TGAACAAGTA CGGCATCTCG ACCGAGACCG TGCGCACCGT CATCACCGCC ACCAACGCCA ACAAGCCCAA GGGCATGCTG GAAGCCGGCA ACCGCGTCTG GACGCTCTAC GCCAACGACC AGGCCAGGCA CGCCGAGGAG TACAAGCCGC TCATCATCGC CTACCGCAAC GGCGCGCCCG TGCGCCTGTC GGACGTGGCC GAGGTGACCG ACAGCGTGCA GGACATCCGC AACTACGGCT CGGCCAACGG CAAGCCCTCG GTGCTGCTGA TCATCAACCG GCAGCCGGGC GCCAACATCA TCGACACGGT CGACCGCATC AACGCCATCC TGCCCTACCT GCGCAACACC ATCCCCGCCC AGATCAACCT GGACGTGATG ATGGACCGCA CGCCCACCAT CCGCGCCTCG CTGCGGGACG TCGAGCGCAC GCTGATGCTG TCGATCGGGC TGGTCATCAT GGTGGTCTAC CTGTTCCTGC GCAACCTGCG CGCCACGCTC ATCCCCAGCG TGGCGGTGCC GGTGTCGCTG ATCGGCACCT TCGGCGTGAT GTACCTGTGC GGCTACAGCC TCGACAACCT CTCGCTGATG GCGCTGACGG TGGCCACCGG CTTCGTGGTC GACGACGCCA TCGTGGTGCT GGAGAACGTC TCGCGCCACA TCGAGAACGG CATGCGACCG ATGCAGGCCG CGCTCAAGGG TGCGCGCGAG GTCGGCTTCA CAGTGGTGTC GATGAGCTTT TCGCTGATCG CCGTGTTCAT TCCGCTACTG ATGATGGGCG GCATCGTGGG GCGGCTGTTC CGGGAGTTCG CGGTCACGCT GTCGGTGGCG ATCCTGGTGT CGCTGGCGAT CTCGCTGACC ACCACGCCGA TGATGTGCGC ACGCCTGCTC AAGCCCGCCA GCGAGGAAGA GCCCGGCTGG TTCCACCGCA AGACCGAGGG CTTCTTCAAC CTCCTGCTCG ACGGCTATCG CCATTCGCTG GCGTGGGCGC TGCGCCACAG CTGGCTGACG CTGCTGATCC TGCTGGCCAC GGTGTGCCTG AACGGCTACC TGTACGTCGT GGTGCCCAAG GGCTTCTTCC CGCAGCAGGA CGTGGGCCGC CTGATGGGCT TCATCCAGGC CGACCAGGCG ATCTCGTTCC AGGCCATGCG GACCAAGCTG GTCGATTTCA TCCACATCGT CCAGCAGGAC CCGGCGGTGG AGAACGTGGT CGGCTTCACC GGCGGCAGCC AGATCAACAG CGGGCAGATG TTCATCCAGC TCAAGCCGCT GGCCGAGCGC AAGCTGTCGG CCGACCAGGT CATCAACCGC CTGCGCGGCA AGCTCGCGCG CGAGCCCGGC GCCAACCTGT TCCTGCAGGC CGTGCAGGAC ATCCGCATCG GCGGCCGCCC CAGCAACGCG CAGTACCAGT ACACGCTGCA GGCCGACAAC CTCGAAGAGC TGCGCGCCTG GGAGCCGAAG ATCCGGCAGG CGCTCACGCA GATCAAGTCG CTGGTGGACG TCAACACCGA CGCGCAGGAC AAGGGCCAGC AGACCGCGCT GGTGTTCGAC CGCGACAAGG CGATGGCGCT GGGCATCACG CCCAAGGACA TCGACAACGC GCTCAACAAC GCCTTCGGCC AGCGCCAGGT GTCGACCATC TACAACCCGC TCAACCAGTA CCGGGTCGTG ATGGAGGCCG CGCCGCAGTA CTGGCAGAAC CCGGAGGGGC TGCGCGACAT CTACCTGATC ACCGCGTCGG GCGCCCAGGT GCCGCTGTCC ACCTTCTCGC ACTACGGGCC GACCAACACG CCGCTGGCGG TCAACCACCA GGGCCAGTTC GCCGCCAGCA CGCTCTCGTT CAACCTGGCG CCCGGCGCCT CGCTGTCGGC CGCCACGCAG CAGATCCAGG ACGCCATGAA CCGCATCGGC GTACCGACCA CGGTGCACGG CAGCTTCCAG GGCACGGCGC GGGCGTTCCA GGATTCGCTC TCCAGTCAGC CGGTGCTGAT CCTGTTTGCG CTGATCACCA TCTACATCGT GCTGGGCGTG CTGTACGAGA GCTACGTGCA CCCGATCACG ATCCTGTCGA CGCTGCCGTC GGCGGGCGTG GGCGCGCTGC TGGCGCTGAT CGTCACGGAC ACCGACTTCT CGGTCATCGC GCTGATCGGC GTGATCCTGC TGATCGGCAT CGTCAAGAAG AACGCGATCA TGATGATCGA CTTCGCACTG GAGGCCGAGC GCAGCCAGGG CATGAGCCCG GCGGACGCCA TCTTCCACGC CTGCGTGCTG CGCTTCCGCC CGATCCTGAT GACGACCATG GCCGCGCTGC TGGGCGCGCT GCCGCTCGCG CTCGGCCACG GCGACGGCGC GGAGCTGCGC CAGCCGCTGG GGATCTCCAT CGTCGGCGGG CTGCTGGTCA GCCAGATCCT GACGCTCTAC ACCACGCCGG TGGTCTACCT GGCGCTCGAC CGGCTGCGCC TGCGCCGCGG CGGCCGCGTC AAGGACGCAC CGCTGCCCGC ACTGGATTCG CAAGGAAGCT GA
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Protein sequence | MNLSATFIAR PVATALLTIG VALAGIAAFN LLPVSPLPQV DFPTISVNAS LPGASPETMA ATVATPLERS LGRIAGITEM TSQSALGSTR VTLQFDLSRD IDGAARDVQA AINASRSLLP SGLPSNPTYR KVNPADAPIM ILGLTSDTKS RGELYDAAST ILAQKLSQIT GVGQVNIGGA SLPAVRVELN PTALNKYGIS TETVRTVITA TNANKPKGML EAGNRVWTLY ANDQARHAEE YKPLIIAYRN GAPVRLSDVA EVTDSVQDIR NYGSANGKPS VLLIINRQPG ANIIDTVDRI NAILPYLRNT IPAQINLDVM MDRTPTIRAS LRDVERTLML SIGLVIMVVY LFLRNLRATL IPSVAVPVSL IGTFGVMYLC GYSLDNLSLM ALTVATGFVV DDAIVVLENV SRHIENGMRP MQAALKGARE VGFTVVSMSF SLIAVFIPLL MMGGIVGRLF REFAVTLSVA ILVSLAISLT TTPMMCARLL KPASEEEPGW FHRKTEGFFN LLLDGYRHSL AWALRHSWLT LLILLATVCL NGYLYVVVPK GFFPQQDVGR LMGFIQADQA ISFQAMRTKL VDFIHIVQQD PAVENVVGFT GGSQINSGQM FIQLKPLAER KLSADQVINR LRGKLAREPG ANLFLQAVQD IRIGGRPSNA QYQYTLQADN LEELRAWEPK IRQALTQIKS LVDVNTDAQD KGQQTALVFD RDKAMALGIT PKDIDNALNN AFGQRQVSTI YNPLNQYRVV MEAAPQYWQN PEGLRDIYLI TASGAQVPLS TFSHYGPTNT PLAVNHQGQF AASTLSFNLA PGASLSAATQ QIQDAMNRIG VPTTVHGSFQ GTARAFQDSL SSQPVLILFA LITIYIVLGV LYESYVHPIT ILSTLPSAGV GALLALIVTD TDFSVIALIG VILLIGIVKK NAIMMIDFAL EAERSQGMSP ADAIFHACVL RFRPILMTTM AALLGALPLA LGHGDGAELR QPLGISIVGG LLVSQILTLY TTPVVYLALD RLRLRRGGRV KDAPLPALDS QGS
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