Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS01963 |
Symbol | RSp0745 |
ID | 1223052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 935144 |
End bp | 935647 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637240605 |
Product | hypothetical protein |
Protein accession | NP_522306 |
Protein GI | 17548966 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.229622 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGATA TCTACGTCAA GTTCGACAGC CCGGCCATCA AGGGGGAGTC CCAGGACAAG GATCACAAGG AGTGGATCGA AGTCAACAGC TGGTCCCAGT CGATCATCCA GCCGCGTTCG GCCACGGCCT CGACCGCGGG CGGCCATACC GCCGAGCGTT GCGAGCACCG CGACATGGTG TTCTCCAAGG ACCTGGACGT GGTCAGCCCG CTGCTGTACC AGCACGCTTC GGGCGGCACG ACCTTCGGTG AAGTGACGAT CGAGTTCTTC CGCGCCGACG GTGAAGGCAA CCGCGTGAAG TACCTCGAGG TCAAGCTGAA GAACGCGATT TTGAGCGAAG TGGATTCGCA GGTGGCTGCC GAGGGCATCC CGACCGATAC GTTCAGCCTG CGCTACGCGG CCGTGCAGTG GAAGTACACC CAGCAGAAGA GCGCCGGCGG CCAGGGCGGC AACTCGCAGG GCGCCTGGAG CCTGACCAAG AACGACAAGA CCTACTCGGT TTAA
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Protein sequence | MKDIYVKFDS PAIKGESQDK DHKEWIEVNS WSQSIIQPRS ATASTAGGHT AERCEHRDMV FSKDLDVVSP LLYQHASGGT TFGEVTIEFF RADGEGNRVK YLEVKLKNAI LSEVDSQVAA EGIPTDTFSL RYAAVQWKYT QQKSAGGQGG NSQGAWSLTK NDKTYSV
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