Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS00901 |
Symbol | RSp0442 |
ID | 1222749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 554436 |
End bp | 555923 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637240302 |
Product | multidrug resistance efflux pump protein |
Protein accession | NP_522003 |
Protein GI | 17548663 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.707111 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGTG CTACTAAACG CTGGGACCTT CGCCGCGCCG CATGCAGCGC GCCAGCGCTG GCCCTGGCGC TCGCCGGCTG CGTCACCGCG CCCGACGTTC GGGGGCCCGC CCTTGCATCG CCCGAGGCGG CGCTGCGCTC GCGGGCGGCC GTCGTGGCGG GCGAACCCGC CTTGGCCGAG ACCGCCGTGC CGTCCCAGTG GTGGGGCCTG TTCGGCGACG CGACGCTGAT CGCCCTGGAA GCCGAGGCCA CCGAATCCAA CCTGGATCTC CAGAGCGCCG CCCCGCGCAT CGAAGAAAGC CGGGCACGCC TGGGGCTGGC CGATGCCGCG CGCCAGCCGC AGTTGGCGGC GGATGCCGGG TACACCCGTT CGGCCATCAG CGAGCACTCG CCGCTGGCCG TGCTCGGCGC GCCGACGCGG GCCTCCGATA CCTGGCTGCT CGGCCTGGAG GCCGGCTGGG AATTGGACCT CTGGGGGCGC CTGCGCCATC AGAGCGAATC CGCCGAAGCC AATCTCGAAG CCAGCGGCTA TGGCAAGGAG GCGGTCAGGG TGTCGATCGC GGCGGAAGTG GCGTACACCT ATCTGCAGTT GCGCGGCGTC CAGGCCCAGG AGTCCGTTGC CGAGCAAAAC CGCCAGCTCG CGGACGGATT GGTGCGCATG GCCGAAAGCC GGGAGCGCCA TGGCGTGGCC ACCCGCTTCG ACGCGGCCGC GGCACGCGCC GATGTGGCCG GAATCGATGC GCGGCTCTCC CAGCTGCACC ACAAGCGCGA GGCCCTGATG AACGCCCTGG CGCTGCTGCT GGGCAAGCCG CCGCGGGAAC TGGACGACCG CCTCGCCGCG GCGGCGCTGC CGGCCATGCC CAAGCGCCTG CCGGTGGGCA TCCCCTCTGA ACTGGCCCGG CAGCGCCCGG ACATTCTGCA GGCGGATGCG CGGCTGCGTG CCGCCGTCGC CGACATCGGC GCGGCCGAGG CCGACTTCTA CCCCCGCATC AGCCTGACCG GCAGCGCCGG CGTGCAGGCC TTCGATTTCT CGGACCTGGG CAGCTGGGCG TCCCGGCGCT ACGCCTTCGG GCCGACGCTG TATCTGCCGA TCTTCGAGGG CGGCCGGCTC AAGAGCAACC TGGCCTTGAG CGCAGCGCGC CATCGCCTGG CCGCCATCGC GTACCAGCAA ACGGTGCTGC GCGCCTGGCA CGAGGTGGAC GACGCCCTCG GCGCCTACGC CAGCGAACTG AGGCGGCACG CGCAACTGCA GCTCGCGCTG GACCAGAACC AGACGGCGCT GAAGGTGGCG CAGCGCGCCT ACCAGCAAGG CACGGCCGAC TTCACCGCCG TGCTGGTGGC CCAGCGTTCG CTGCTGGCCA GCCATGCCGA GCTGATCGAC TGCTCGACGG CATCGGCGCT GTCGGTCGTC GGGCTCTATC GCGCCCTTGG CGGGGGCTGG TCTTCGCAAC TGCGCGCAGA CGCTGCCCCC TCGGGAAGCG CGTCATGA
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Protein sequence | MNRATKRWDL RRAACSAPAL ALALAGCVTA PDVRGPALAS PEAALRSRAA VVAGEPALAE TAVPSQWWGL FGDATLIALE AEATESNLDL QSAAPRIEES RARLGLADAA RQPQLAADAG YTRSAISEHS PLAVLGAPTR ASDTWLLGLE AGWELDLWGR LRHQSESAEA NLEASGYGKE AVRVSIAAEV AYTYLQLRGV QAQESVAEQN RQLADGLVRM AESRERHGVA TRFDAAAARA DVAGIDARLS QLHHKREALM NALALLLGKP PRELDDRLAA AALPAMPKRL PVGIPSELAR QRPDILQADA RLRAAVADIG AAEADFYPRI SLTGSAGVQA FDFSDLGSWA SRRYAFGPTL YLPIFEGGRL KSNLALSAAR HRLAAIAYQQ TVLRAWHEVD DALGAYASEL RRHAQLQLAL DQNQTALKVA QRAYQQGTAD FTAVLVAQRS LLASHAELID CSTASALSVV GLYRALGGGW SSQLRADAAP SGSAS
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