| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00431 |
|---|
| Symbol | RSp0474 |
|---|
| ID | 1222781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 587685 |
|---|
| End bp | 589781 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637240334 |
|---|
| Product | putative general secretion pathway GSPD-related protein |
|---|
| Protein accession | NP_522035 |
|---|
| Protein GI | 17548695 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCGCC GTATCAGCCA GGACACCATC GCAGACCGGC TGCTCCAGCA GGCCGGCAAA
GAACTCAACG CCGGCAAACG CACCGACGCG CGGGCCACGC TCAAGCGCCT GCTGGAGATC
GAACCTCAGA ACGACCACGC CCTCGCGCTG CTGCAATCGA TCAAGCGCGA TGAGCAAACG
GCCGCCGCGC TGGAAACCGC CAAACAGAAA ACCGGCGGCG GTACGCCGGA AGCCGCTCTG
AACGCCATCG AGGGCGCGTT GCGTGGCGAT CCGAAAAATC GCCGCTTGTT GGAGGCGCAG
GCCTCGCTTG AGCAGCAATC GCGGCAGCGC GATCTGCCGC AGGCCAAGGG CGCTGCCTCC
AAACAGCCGA TCAACCTGGA TTTCCGCGAT GCCAGCGTCC GCATGATTTT CGAGGCGATG
GCGCGCAGCA CAGGCATCAA CTTCATCCTC GACAAGGACG TCCGCCCGGA CCTGAAGACG
ACCGTCTTCA TTCGCCAGGC CAAGCTGGAG GATGCGCTCG ACCTGATCCT GAGCACCACG
CAGCTCAATA AAAAGATGAT GAATGGCTCG ACCATCCTCA TCTATCCCAA CACGCCGGAA
AAACAGCGCG ATTATCAGGA TCTGGTGGTC AGGGCGTTTT ATCTGACCAA CGCCGATGCC
AAGCAGACTG GTGCGATGCT CAAGGCGATG CTCAAGATCC GGGATCCGTA TATCGACGAG
CGCACCAATA TGGTGGTGAT TCGCGAATCG CCGGATGTCG TGCGTCTGGC TGAGCGGCTG
GTGGAACTGC AGGACCGCAA CGATTCGGAA GTGGTCCTCG AAGTCGAGGT GCTGGAAGTC
AGTTCCACCA AGCTGACGCA ATTGGGTGTC CAGTATCCGA ACAGCTTCAC GCTGACGCCG
CTGTCGGCAA CCGGCGCCTC GTCGCTCACG CTGAGCGACT TCAAAGGGCT GAACAGCGAC
CGGATCGGCG TGAGCACGCC CAATGTCGTG CTCAACCTGC GGCGCGAGCT GGGGGATACC
GATCTGCTGG CGAACCCGAA GATCCGCGCG AAGAATCACG AGAAGGCCAA GATCCTGATC
GGCGACAAGC TGCCGGTGAT CACCACGACC TCCACGTCGA CGGGGTTCGT GTCGGAGAGC
GTGCAGTACA TCGACGTCGG CCTGAAGCTG GAAGTCGAGC CGTCGATCTC GCCCGACGAT
GAGGTCAGCA TGAAGATCAA CCTCGAAGTC AGTTCGCTGA CCAACCAGAT CACGACGCGC
AGCGGCACCG TGGCGTATCA GATCGGCACG CGCACCGCCA ACACCGTGCT CAAGCTGCAC
GACGGCGAAA CGCAGCTGCT GGCCGGCCTC ATCAAGACGC AGCAGACCTC CAGCGCCGCC
CGCATCCCGG GGCTGGGCGA CATTCCGCTG CTGGGCCGGC TGTTCTCCTC CCAGACCGAC
AACGGCGTGC GCAACGAGAT CGTGCTGTCG ATCACGCCGC GCGTCGTCAA GCCGTCGCAC
CGGCCGGACA CCAACTTCAT GGAGTTCTGG TCCGGCACCG AGACCAATGC CCGCGCACGC
CGCACGTTGC AGGATGGGCA AGCGAGCGCC GAGGGCAAAG CCGGCGACAG TGCACCGCCG
ACTGCGGCAG CGGGCCAATC GGCGGCTGCA GACGAGAATC CGGCCGCTGT GCCTTCGGAG
GGCGGCAACA TTGCACTGAC CATGAATGGC CCGTCGAGCG CCAAGGCTGG GGAAGCGTTC
TGGGTCTCGC TGAACCTGCG TACGGATACC GCGCTGCGCA GCATGCCGAT CCAGTTCGCC
TACGACAAGG AGCGCTTCGC GTTCGACGGC GTGGAAGCCG GATCACTCTT CTCCGGCCAG
AAAACCGCAC CGAACCTGGC CAAGACCGAT CTGCCCGCGG TAGGCCGGGT CATGGTCACG
CTCTCGGCCG CGGACAACGC ACCGCTCACC GGGCAAGGCG AATGGGCCAA GCTGCGTTTC
CGCGCCAAGG CCGCCGGGAC CGGCGCGATC TCGATGGCGA CGGCAACGCC GGTCGGCATG
ACGGCGGCAC CGCAGGCGCC GCAGATGCCG GCGCCGGTGT CCATCTCCGT CAAGTAA
|
|---|
| Protein sequence | MARRISQDTI ADRLLQQAGK ELNAGKRTDA RATLKRLLEI EPQNDHALAL LQSIKRDEQT
AAALETAKQK TGGGTPEAAL NAIEGALRGD PKNRRLLEAQ ASLEQQSRQR DLPQAKGAAS
KQPINLDFRD ASVRMIFEAM ARSTGINFIL DKDVRPDLKT TVFIRQAKLE DALDLILSTT
QLNKKMMNGS TILIYPNTPE KQRDYQDLVV RAFYLTNADA KQTGAMLKAM LKIRDPYIDE
RTNMVVIRES PDVVRLAERL VELQDRNDSE VVLEVEVLEV SSTKLTQLGV QYPNSFTLTP
LSATGASSLT LSDFKGLNSD RIGVSTPNVV LNLRRELGDT DLLANPKIRA KNHEKAKILI
GDKLPVITTT STSTGFVSES VQYIDVGLKL EVEPSISPDD EVSMKINLEV SSLTNQITTR
SGTVAYQIGT RTANTVLKLH DGETQLLAGL IKTQQTSSAA RIPGLGDIPL LGRLFSSQTD
NGVRNEIVLS ITPRVVKPSH RPDTNFMEFW SGTETNARAR RTLQDGQASA EGKAGDSAPP
TAAAGQSAAA DENPAAVPSE GGNIALTMNG PSSAKAGEAF WVSLNLRTDT ALRSMPIQFA
YDKERFAFDG VEAGSLFSGQ KTAPNLAKTD LPAVGRVMVT LSAADNAPLT GQGEWAKLRF
RAKAAGTGAI SMATATPVGM TAAPQAPQMP APVSISVK
|
|---|
| |