| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3417 |
|---|
| Symbol | |
|---|
| ID | 1222281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3693607 |
|---|
| End bp | 3694173 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637239834 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_521536 |
|---|
| Protein GI | 17548134 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAC ACGCCAGTAT CGCTACCGGG CCAGCGATTC ACCCTGACGC CTGGATCAAG
GCTTGGAAGT TCGCCGCCGA CGCCCATCGC GAACAGAAGG TGAAAGGCAG CGACCTCCCG
TATCTCTTTC ATGTGGGCGC GGTGATGATG GAACTCCTCG CGGCCCACAA CGCATTGCCG
ATTGAGGACA TCGACTTGGC AGTCACGTGT GCGGCGCTGC ATGACTGCAT GGAAGATCAG
GGCGTTCCAA TCGAGGTCTT GCAACGGGAG TTCGGCCTGC ACGTGGCCGC AGGCGTCGAA
GCACTCACGA AACGCGCGGC GCTTTCCAAG CAAGAAGCGA TGATTGACAG CCTGGATCGC
ATTCGACAGC AGCCCAAGGC GATTGGGTGC GTGAAGCTGG CAGATCGTAT CGTCAACCTT
GCGCCATCGC CCGCTCACTG GTCAGCTGCA AAAATTACGG CGTATCGGGA AGAAGCGCGA
TTGATACTCG CTGCCCTGGG TCACGCCCAT GAGGGCCTCG CGGCGCGACT GGAACAAAAG
ATCCGTCTCT ACCCCGCTGC GGCATGA
|
|---|
| Protein sequence | MTKHASIATG PAIHPDAWIK AWKFAADAHR EQKVKGSDLP YLFHVGAVMM ELLAAHNALP
IEDIDLAVTC AALHDCMEDQ GVPIEVLQRE FGLHVAAGVE ALTKRAALSK QEAMIDSLDR
IRQQPKAIGC VKLADRIVNL APSPAHWSAA KITAYREEAR LILAALGHAH EGLAARLEQK
IRLYPAAA
|
|---|
| |