Gene RSc3388 details

Gene Information

• Locus tag: RSc3388
• ID: 1222252
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 3653514
• End bp: 3654161
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637239805
• Product: two-component response regulator transcription regulator protein
• Protein accession: NP_521507
• Protein GI: 17548105
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0201761
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCACCGT TCCTGTCCAT CGTGGCTGCG GACGACCATC CCGTCATCCT GATGGGACTG 
GCCACCGCCA TCCAGCAATT TCCCCGGCAG AAGATCATCG CGCAGGCGCA CGACGGCCAT 
GCGCTGCTGG CACTGCTCGA GTCCACCGAC TGCGATGTCG TCGTCACCGA TTACCACATG 
AACGGCGACG CGGCGTCCGA CGGCATGCAG TTGCTGACGC GGTTGCGCGC GCGGCATCCC 
CAGCGCGCGG TGGTGGTCTG CACCATGGTT TGCAACCCGG CGCTGCTGCG CTGCATGCAG 
CAGCTGGGCG TGCGCCGCAT CGTCAGCAAG CGCGACGATC TGGCGCATGT CGGCCACGCC 
GTCGCGGCAA GCGCGTGCGG GCTGCCCTAC TACAGCCCCA CCATCGTCCT GGAAGGCGGC 
TTCGGCATTG GCGCACGCGA GGCCTTCCAG GGCCTGAGCG CACGCGAGCG CGAAGTGGTG 
AGCCTCTACG TGAGCGGCAT GGCGGTGTCG GAGATCGCCA GCCGGCTCGG TTCCAGCATC 
AAGACCGTCA GCACGCAGAA GACCATGGCG CTGCGCAAGC TCGGCCTGGC GCGCGAGACC 
GATCTGTTCC AGTACGTCCG CACCGCCGGG CTGCCGGCGC TGCATTGA 

 

Protein sequence

MSPFLSIVAA DDHPVILMGL ATAIQQFPRQ KIIAQAHDGH ALLALLESTD CDVVVTDYHM 
NGDAASDGMQ LLTRLRARHP QRAVVVCTMV CNPALLRCMQ QLGVRRIVSK RDDLAHVGHA 
VAASACGLPY YSPTIVLEGG FGIGAREAFQ GLSAREREVV SLYVSGMAVS EIASRLGSSI 
KTVSTQKTMA LRKLGLARET DLFQYVRTAG LPALH