| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3386 |
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| Symbol | |
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| ID | 1222250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3649629 |
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| End bp | 3651218 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637239803 |
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| Product | putative outermembrane signal peptide protein |
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| Protein accession | NP_521505 |
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| Protein GI | 17548103 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
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| TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000211663 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTGT TTTCCCGCAT CGCGCGCGCG GCCCTGCCGG CCATCGCCCT GGCCATCGCC
GCCGGCGCCC ACGCCGAATC CAAGCCGATC AAGCTCGGCA CCATGAGCGG CCCCGACGCG
CAAATCTGGG AAGTGGTGCA GAAGGTTGCC AAGAAGGACG GCCTGGACAT CAAGATCATC
GAGTTCAACG ACTACGCCCA GCCCAACCCG GCGCTGGACG CCGGCGACCT GGATGCCAAC
GGCTTCCAGC ATCAGCCCTT CCTTGACGGG CAGGTCAAGG CGCGCGGCTA CAAGATCGTC
AATGTGGGCC TGACCTATGT CGCGCCGATG GGCTTCTATG CGAAGAAGAT CAAGTCGCTC
GCCGCGCTGA AGGAAGGCGC CAAGGTCGGC ATCCAGAACG ATCCGTCCAA CGGCAACCGT
GCCCTGCTGC TGCTGCAGAA GGCCGGCGTG ATCAAGCTGA AGGCCGGCGC CGGCACCAAC
GGCAGCAACG CCACGCCGCG CGACGTGGTC GAGAACCCGA AGAAGATCAA GCTGGTCGAG
CTCGACTCCG CCCAGCTGCC GCGCTCGCTG GATGACCTGG ACGCCGCTGC CATCAACACC
GACTACGCGG TCAAGAACGG CCTGACGCCC GCCAAGGACG CCATCGCGCT GGAAGACCGC
CAGGGCCCGT ACGCCAACCT GATCGCCGTG CGCGAGAAAG ACAAGAACCA GCCCTGGGTG
AAGACGCTGG TGCACGCCTA TCAGTCGGCA CTTTTTCACG ACAAGATCCA CGAGGTTTCT
CCCATGTCTC TGTTTTCCCG CATCGCGCGC GCGGCCCTGC CGGCCATCGC CCTGGCCATC
GCCGCCGGCG CCCACGCCGA ATCCAAGCCG ATCAAGCTCG GCACCATGAG CGGCCCCGAC
GCGCAAATCT GGGAAGTGGT GCAGAAGGTT GCCAAGAAGG ACGGCCTGGA CATCAAGATC
ATCGAGTTCA ACGACTACGC CCAGCCCAAC CCGGCGCTGG ACGCCGGCGA CCTGGATGCC
AACGGCTTCC AGCATCAGCC CTTCCTTGAC GGGCAGGTCA AGGCGCGCGG CTACAAGATC
GTCAATGTGG GCCTGACCTA TGTCGCGCCG ATGGGCTTCT ATGCGAAGAA GATCAAGTCG
CTCGCCGCGC TGAAGGAAGG CGCCAAGGTC GGCATCCAGA ACGATCCGTC CAACGGCAAC
CGTGCCCTGC TGCTGCTGCA GAAGGCCGGC GTGATCAAGC TGAAGGCCGG CGCCGGCACC
AACGGCAGCA ACGCCACGCC GCGCGACGTG GTCGAGAACC CGAAGAAGAT CAAGCTGGTC
GAGCTCGACT CCGCCCAGCT GCCGCGCTCG CTGGATGACC TGGACGCCGC TGCCATCAAC
ACCGACTACG CGGTCAAGAA CGGCCTGACG CCCGCCAAGG ACGCCATCGC GCTGGAAGAC
CGCCAGGGCC CGTACGCCAA CCTGATCGCC GTGCGCGAGA AAGACAAGAA CCAGCCCTGG
GTGAAGACGC TGGTGCACGC CTATCAGTCG GAAGAGGTGC GCAAGTTCAT CGAGACCCAA
TTCAAGGGCG CGATTCTGCC GGCGTTCTGA
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| Protein sequence | MSLFSRIARA ALPAIALAIA AGAHAESKPI KLGTMSGPDA QIWEVVQKVA KKDGLDIKII
EFNDYAQPNP ALDAGDLDAN GFQHQPFLDG QVKARGYKIV NVGLTYVAPM GFYAKKIKSL
AALKEGAKVG IQNDPSNGNR ALLLLQKAGV IKLKAGAGTN GSNATPRDVV ENPKKIKLVE
LDSAQLPRSL DDLDAAAINT DYAVKNGLTP AKDAIALEDR QGPYANLIAV REKDKNQPWV
KTLVHAYQSA LFHDKIHEVS PMSLFSRIAR AALPAIALAI AAGAHAESKP IKLGTMSGPD
AQIWEVVQKV AKKDGLDIKI IEFNDYAQPN PALDAGDLDA NGFQHQPFLD GQVKARGYKI
VNVGLTYVAP MGFYAKKIKS LAALKEGAKV GIQNDPSNGN RALLLLQKAG VIKLKAGAGT
NGSNATPRDV VENPKKIKLV ELDSAQLPRS LDDLDAAAIN TDYAVKNGLT PAKDAIALED
RQGPYANLIA VREKDKNQPW VKTLVHAYQS EEVRKFIETQ FKGAILPAF
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