| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3379 |
|---|
| Symbol | |
|---|
| ID | 1222243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3640728 |
|---|
| End bp | 3641537 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637239796 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | NP_521498 |
|---|
| Protein GI | 17548096 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02001] conserved hypothetical protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCA AGCTGTTTCC ATCGCGCGCC ACCGTCATCG GTGGCGTTGT CTTCTGCGCC
GCCGTTCTGA ACGGGACGCT CGCCCATGCG CAATCCACCG ATACCGCCCC GGCGGCTGCG
CCCGCTCCCG CGCTGACGGC TAACGTCACG CTGGCCAGCC AGTACCGCTA TCGCGGGATC
ATGCAGTCCA ACAACAAGCC GGCGATCCAG GGCGGCTTCG ACTACGCGAT CCCTGCCGGC
CTGCTGCCCG AGGGCTTCTA TGTGGGCAAC TGGAACGCGT CGATCAGCTG GCTGAGCGAC
GCCAACTCGA GCGTTTCGGC GCCGATCGAG ATGGATTTCT ACGGCGGCTA CAAGACCGAG
ATCGCCAAGA ATGTGCCGAT CGACGTGGGC GTGCTGCAGT ACTACTACCC GGGCAGCTAC
CCCGAGGGCT TCACGCGCCC GCACACCACC GAAGGCTACG CGCAGATCGG CTACGGCCCC
GTTACCTTCA AGTACTCGCA CGCGTTCTCG AACCTGTTCG GCTTTGCCGA TTCGCACCAC
AGCCAGTACT TCGACCTGTC GGGCAACTTC GACACCGGCT TCTGGGGCCT GACGCTGAAC
CTGCACGTCG GCTACCAGGA CGTGAAGCAC CAGAGCCCGC GCGCTTCGTA CGCCGACTGG
AAGATCGGCG TGACGAAGGA CTTCGGCAGC GGCTGGACGG CATCGCTCGC GTACATCGAC
ACCAACGCCT CGCGCCTGGC CTACACCAAC CCGCGCGGCA ACTACATGGG CCGCGCGACC
GCGCTGCTGG CCGTGACCAA GACGTTCTGA
|
|---|
| Protein sequence | MQAKLFPSRA TVIGGVVFCA AVLNGTLAHA QSTDTAPAAA PAPALTANVT LASQYRYRGI
MQSNNKPAIQ GGFDYAIPAG LLPEGFYVGN WNASISWLSD ANSSVSAPIE MDFYGGYKTE
IAKNVPIDVG VLQYYYPGSY PEGFTRPHTT EGYAQIGYGP VTFKYSHAFS NLFGFADSHH
SQYFDLSGNF DTGFWGLTLN LHVGYQDVKH QSPRASYADW KIGVTKDFGS GWTASLAYID
TNASRLAYTN PRGNYMGRAT ALLAVTKTF
|
|---|
| |