Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3350 |
Symbol | ompW |
ID | 1222214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3611240 |
End bp | 3611965 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637239767 |
Product | putative outer membrane W signal peptide protein |
Protein accession | NP_521469 |
Protein GI | 17548067 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.539621 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTATA AAAAAGCACT GGCGGCCGCC GCCGGGATGA TCCTTGCCAC TGCCGCCCAC GCCCAAAGCG CGGGGAGCAA CATCGTCAGC CTCGGCTGGT TCCGCGTCAT GCCGAACAGC TCGAGCGACC CGCTGCAGAT CGACAGCGTG GGTGGTGTGC CGCTCAACCG GTCGGTACCG AACACGGGCG CCAAGATCAA GGACGCCGAT ACGCTCGGCC TCGCCTTCAC GCACTTCTTC ACCGACAACC TGGCGGTCGA ACTGGTCGGC GGCATCCCGC CGCGCCACAA GATCGAGGGC ACCGATTCCT TCGCGCGCTA CGGCCAGATC GGCTCGGCCA AGCAATGGAG CCCGACCGTG CTGGCCAAGT GGTACTTCGG CGGCGCGGAC AGCAAGTTCC GCCCCTATGT CGGCGCAGGC CTGAACTACA CCTGGTTCAC CGACGAGAAG ATCACCAACA GCGCGTTCCA GACCCAGGTG CTGGGCAACG GCTTCCCGAG CACGAGCACC GTGTCGACCG ACAGCTCGCT CAACCCGGTG GTGAGCGCGG GCGCCACGTA CGCCATCACC AAGGACTGGT TCCTTGGCCT GTCGGTGTCG TACCTGCCGC TGAAGACCAC GGCCAAGATC GATACCACGC TGGCCAACGG CCAGCATGCC GTGACCGAAG CGAAGATCAA GATCAACCCG ATCGTGACCT TCCTGTCGGT CGGCTACCGT TTCTGA
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Protein sequence | MAYKKALAAA AGMILATAAH AQSAGSNIVS LGWFRVMPNS SSDPLQIDSV GGVPLNRSVP NTGAKIKDAD TLGLAFTHFF TDNLAVELVG GIPPRHKIEG TDSFARYGQI GSAKQWSPTV LAKWYFGGAD SKFRPYVGAG LNYTWFTDEK ITNSAFQTQV LGNGFPSTST VSTDSSLNPV VSAGATYAIT KDWFLGLSVS YLPLKTTAKI DTTLANGQHA VTEAKIKINP IVTFLSVGYR F
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