| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3163 |
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| Symbol | |
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| ID | 1222026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3421520 |
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| End bp | 3423622 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637239581 |
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| Product | TPR domain protein |
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| Protein accession | NP_521284 |
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| Protein GI | 17547882 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTCC CGCCCAGTCG CCCGGAAACC CTGAGCATCC CGGAAGCGCT CCACCGCGCC
CACGCTCACT GGAGCGCCGG TCAGGCCGCC CAGGCGGAGC TGCTGTGCCA GCGCGTGCTG
GCCGCCTGGC CCGGTCAGGC CGATGCGCTG CACCTGCTTG GCCTGATGGC GCATGCCTAC
GGCCATCTCG ATCTCGCCAT CGCTCACCTG CGCCAGGCTT GCCTGGCACC GCGCGCCCCA
GCGGCCTATT CCAGCAATCT GGCCGAGATG TACCGCCAGA AGGGGTTGCT CGCCGAAGCG
GAAGACGCGG CCCGCCGCGC GGTGGCCATG GACCCGGCGC TGGTGTCGGG CTGGAACAAT
CTGGGCATCG TGCTGCAAGA GGCGGGCAAG TTTGCGGAAA GCCTCGACTG CCTGGAGCGC
GTGATCTTGC TCCAGCCCGA CGGGGCGCAG GCGCACAACA ATCTCGCCAA CACGTTGAGG
CGCCTGGAGC GTCTGGAGCG TGCGGAGTCT CACTACCGCC AGGCGCTGGA ACTGGATCCG
GCCTATGCCG AGGCACACAG CAACCTGGCA TTCCTGCTGT CCGCCCAGGG CCGCCACGAC
GAAGCGGCCG CCGCTGCCCA GCACGCCATC GAACTCAGCC CGCGCCTGGT GGACGCCTAT
CTGAACCTGG CGGAGGCGGA AATGGGCCGC CACCGCCATG AGGCCGCCCT ACGGGTGCTG
GATACGCTCT CGACCTTCGC CCCGCAGCAT CCGGCCGCAC TGACGGCGCG CGCGAACGTG
CTCAAGCGTG TCGAACGCCT CGATGAGGCG CTCGCCGTTG CACGCCAGGC GGTGGTGCTG
GCCCCCCGCA GCGCCGAGGC GCACCACGCG CTCGCGATGG CGCTCCAGAC GCTCGGGCAA
ACCGACGAGG CGCTGCCGCA TTTCGAGCAG GCGGCGCGGC TGCCCGGCGC GGTGGCCGAG
GAAGCGCTGG TCGGGCGCGC CACCCTGCTG ATGGAAGCGG GCCGCCGGGA TGCGGCACGC
GCCGCCTTCG ACCAGGCGCT GGAGCAGTTT CCGGGCTCGG TGCAGGCACT GGCCGGCCGC
GCCGATGCGC GGACCTTCAC GGCCGGCGAC CCCGACATCG CGGCGCTCGA AGCGTGCCTC
GCCGAAGGCG AGCGTCGCTC GCTGCGCGAC CGGATCTCGG CCCATTTCGC GCTCGGCAAG
GCCTACCTCG ACCTCCAGGA TCCGGCGCGG GCCTTTCATC ACCTCGACGC GGGCAACCGG
CAGAAACGTT CGACCTTCAC CTATGACGGC GCCGCGAGCC GCCGGTGGAT GGAGCGCATC
GCCGAAGCCT TTCCCCCGGA ACGGCATGAC CCGCTGCATG CCACCGGCGA GCCGTCAGCG
TTGCCGGTGT TCATCGTCGG CATGCCGCGC TCGGGCACCA CGCTGATCGA GCAGATCGTG
TCGTCGCACC CGCAGGTCAT GGGCGCCGGC GAACTGTCGG CCCTGCGCCT GGTGGTCGAA
GGCAGCGGCC TGTTCCCGGA CGGCATGCAA CGGTTGGCAG GCGAGGCGCG CGGCGCGCTG
TTCCGGCAGC TCGGACAGGC GTATCTGTCG CGCGTCGCGC CGCTCGCCCA GGGACGGGCG
CGGCTGGTCG ACAAGATGCC GAGCAATTTC CTGTACGCCA GGCTGATCCC GCTGATCCTG
CCGGGGGCGC GCATCATCCA TGCCCGCCGC GACCCGGTGG ATACCTGCCT GTCCTGCTAC
ACCAAGCTCT TCGCCGGCGA GCAGCAGTTC GCCTACGACC AGGCCGAACT GGGGGCGCTC
TACCGCGGCT ACGCGCGCCT GATGGCGCAT TGGCGCGCAG TGTTGCCACC CGGCTGCTTC
ATCGAGGTTG ACTACGAGGC CGTGGTGGAT GACCTGGAAG GCGAGGCGCG GCGCTTGATC
GATTTCCTGG ACCTGCCATG GAACCCGGCC TGCCTGCACT TCCATGACAA CCGCCGGGTG
GTGCGCACCG CCAGCGTCAA CCAGGTGCGG CAGCCAATCT ACACAACCTC GAAGGGTCGC
TGGCAGGCGT ATGCCGACTA TCTCGGCCCG CTGCTGGAGG CACTTGGGGT CGAGGCGCCA
TGA
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| Protein sequence | MSLPPSRPET LSIPEALHRA HAHWSAGQAA QAELLCQRVL AAWPGQADAL HLLGLMAHAY
GHLDLAIAHL RQACLAPRAP AAYSSNLAEM YRQKGLLAEA EDAARRAVAM DPALVSGWNN
LGIVLQEAGK FAESLDCLER VILLQPDGAQ AHNNLANTLR RLERLERAES HYRQALELDP
AYAEAHSNLA FLLSAQGRHD EAAAAAQHAI ELSPRLVDAY LNLAEAEMGR HRHEAALRVL
DTLSTFAPQH PAALTARANV LKRVERLDEA LAVARQAVVL APRSAEAHHA LAMALQTLGQ
TDEALPHFEQ AARLPGAVAE EALVGRATLL MEAGRRDAAR AAFDQALEQF PGSVQALAGR
ADARTFTAGD PDIAALEACL AEGERRSLRD RISAHFALGK AYLDLQDPAR AFHHLDAGNR
QKRSTFTYDG AASRRWMERI AEAFPPERHD PLHATGEPSA LPVFIVGMPR SGTTLIEQIV
SSHPQVMGAG ELSALRLVVE GSGLFPDGMQ RLAGEARGAL FRQLGQAYLS RVAPLAQGRA
RLVDKMPSNF LYARLIPLIL PGARIIHARR DPVDTCLSCY TKLFAGEQQF AYDQAELGAL
YRGYARLMAH WRAVLPPGCF IEVDYEAVVD DLEGEARRLI DFLDLPWNPA CLHFHDNRRV
VRTASVNQVR QPIYTTSKGR WQAYADYLGP LLEALGVEAP
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