Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3163 |
Symbol | |
ID | 1222026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3421520 |
End bp | 3423622 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637239581 |
Product | TPR domain protein |
Protein accession | NP_521284 |
Protein GI | 17547882 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACTCC CGCCCAGTCG CCCGGAAACC CTGAGCATCC CGGAAGCGCT CCACCGCGCC CACGCTCACT GGAGCGCCGG TCAGGCCGCC CAGGCGGAGC TGCTGTGCCA GCGCGTGCTG GCCGCCTGGC CCGGTCAGGC CGATGCGCTG CACCTGCTTG GCCTGATGGC GCATGCCTAC GGCCATCTCG ATCTCGCCAT CGCTCACCTG CGCCAGGCTT GCCTGGCACC GCGCGCCCCA GCGGCCTATT CCAGCAATCT GGCCGAGATG TACCGCCAGA AGGGGTTGCT CGCCGAAGCG GAAGACGCGG CCCGCCGCGC GGTGGCCATG GACCCGGCGC TGGTGTCGGG CTGGAACAAT CTGGGCATCG TGCTGCAAGA GGCGGGCAAG TTTGCGGAAA GCCTCGACTG CCTGGAGCGC GTGATCTTGC TCCAGCCCGA CGGGGCGCAG GCGCACAACA ATCTCGCCAA CACGTTGAGG CGCCTGGAGC GTCTGGAGCG TGCGGAGTCT CACTACCGCC AGGCGCTGGA ACTGGATCCG GCCTATGCCG AGGCACACAG CAACCTGGCA TTCCTGCTGT CCGCCCAGGG CCGCCACGAC GAAGCGGCCG CCGCTGCCCA GCACGCCATC GAACTCAGCC CGCGCCTGGT GGACGCCTAT CTGAACCTGG CGGAGGCGGA AATGGGCCGC CACCGCCATG AGGCCGCCCT ACGGGTGCTG GATACGCTCT CGACCTTCGC CCCGCAGCAT CCGGCCGCAC TGACGGCGCG CGCGAACGTG CTCAAGCGTG TCGAACGCCT CGATGAGGCG CTCGCCGTTG CACGCCAGGC GGTGGTGCTG GCCCCCCGCA GCGCCGAGGC GCACCACGCG CTCGCGATGG CGCTCCAGAC GCTCGGGCAA ACCGACGAGG CGCTGCCGCA TTTCGAGCAG GCGGCGCGGC TGCCCGGCGC GGTGGCCGAG GAAGCGCTGG TCGGGCGCGC CACCCTGCTG ATGGAAGCGG GCCGCCGGGA TGCGGCACGC GCCGCCTTCG ACCAGGCGCT GGAGCAGTTT CCGGGCTCGG TGCAGGCACT GGCCGGCCGC GCCGATGCGC GGACCTTCAC GGCCGGCGAC CCCGACATCG CGGCGCTCGA AGCGTGCCTC GCCGAAGGCG AGCGTCGCTC GCTGCGCGAC CGGATCTCGG CCCATTTCGC GCTCGGCAAG GCCTACCTCG ACCTCCAGGA TCCGGCGCGG GCCTTTCATC ACCTCGACGC GGGCAACCGG CAGAAACGTT CGACCTTCAC CTATGACGGC GCCGCGAGCC GCCGGTGGAT GGAGCGCATC GCCGAAGCCT TTCCCCCGGA ACGGCATGAC CCGCTGCATG CCACCGGCGA GCCGTCAGCG TTGCCGGTGT TCATCGTCGG CATGCCGCGC TCGGGCACCA CGCTGATCGA GCAGATCGTG TCGTCGCACC CGCAGGTCAT GGGCGCCGGC GAACTGTCGG CCCTGCGCCT GGTGGTCGAA GGCAGCGGCC TGTTCCCGGA CGGCATGCAA CGGTTGGCAG GCGAGGCGCG CGGCGCGCTG TTCCGGCAGC TCGGACAGGC GTATCTGTCG CGCGTCGCGC CGCTCGCCCA GGGACGGGCG CGGCTGGTCG ACAAGATGCC GAGCAATTTC CTGTACGCCA GGCTGATCCC GCTGATCCTG CCGGGGGCGC GCATCATCCA TGCCCGCCGC GACCCGGTGG ATACCTGCCT GTCCTGCTAC ACCAAGCTCT TCGCCGGCGA GCAGCAGTTC GCCTACGACC AGGCCGAACT GGGGGCGCTC TACCGCGGCT ACGCGCGCCT GATGGCGCAT TGGCGCGCAG TGTTGCCACC CGGCTGCTTC ATCGAGGTTG ACTACGAGGC CGTGGTGGAT GACCTGGAAG GCGAGGCGCG GCGCTTGATC GATTTCCTGG ACCTGCCATG GAACCCGGCC TGCCTGCACT TCCATGACAA CCGCCGGGTG GTGCGCACCG CCAGCGTCAA CCAGGTGCGG CAGCCAATCT ACACAACCTC GAAGGGTCGC TGGCAGGCGT ATGCCGACTA TCTCGGCCCG CTGCTGGAGG CACTTGGGGT CGAGGCGCCA TGA
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Protein sequence | MSLPPSRPET LSIPEALHRA HAHWSAGQAA QAELLCQRVL AAWPGQADAL HLLGLMAHAY GHLDLAIAHL RQACLAPRAP AAYSSNLAEM YRQKGLLAEA EDAARRAVAM DPALVSGWNN LGIVLQEAGK FAESLDCLER VILLQPDGAQ AHNNLANTLR RLERLERAES HYRQALELDP AYAEAHSNLA FLLSAQGRHD EAAAAAQHAI ELSPRLVDAY LNLAEAEMGR HRHEAALRVL DTLSTFAPQH PAALTARANV LKRVERLDEA LAVARQAVVL APRSAEAHHA LAMALQTLGQ TDEALPHFEQ AARLPGAVAE EALVGRATLL MEAGRRDAAR AAFDQALEQF PGSVQALAGR ADARTFTAGD PDIAALEACL AEGERRSLRD RISAHFALGK AYLDLQDPAR AFHHLDAGNR QKRSTFTYDG AASRRWMERI AEAFPPERHD PLHATGEPSA LPVFIVGMPR SGTTLIEQIV SSHPQVMGAG ELSALRLVVE GSGLFPDGMQ RLAGEARGAL FRQLGQAYLS RVAPLAQGRA RLVDKMPSNF LYARLIPLIL PGARIIHARR DPVDTCLSCY TKLFAGEQQF AYDQAELGAL YRGYARLMAH WRAVLPPGCF IEVDYEAVVD DLEGEARRLI DFLDLPWNPA CLHFHDNRRV VRTASVNQVR QPIYTTSKGR WQAYADYLGP LLEALGVEAP
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