| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3116 |
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| Symbol | gspF |
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| ID | 1221980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3354195 |
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| End bp | 3355406 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637239534 |
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| Product | general secretory pathway F transmembrane protein |
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| Protein accession | NP_521237 |
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| Protein GI | 17547835 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.205783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCCT TCCGCTACGA AGCCGCCGAC GCCTCCGGCC GCACCGACCG CGGCGTCATC
GAAGCCGACA GCGCCCGCCA GGCGCGCACC GCGCTGCGCG CCCGCGGGCT GACGCCGCTG
GTGGTCGATG CGCTCGGTGC GCAGGCCGCC AAGCGCGCGG GCTCCCGTTT CGGCAAGCGG
CTCTCGCCGC AGGAAAACGC CCTGGTGACG CGCCAGCTCG CCAGCCTGCT GGTCGCCGGC
CTGCCGCTGG ACGAAGCGCT GGCCGCGCTG GCCGACCAGG CCGAACGCCC CTATGTGCAC
GAGCTGCTGG CATCCATCCG CGCCGAGGTG GTGGGCGGCA GCTCGCTGTC GGTGGCGCTG
GCCCAGCATC CGCGCGATTT TCCGGACATC TACCGCGCGC TGGTCTCGGC CGGCGAGCAT
TCGGGCAACC TGGGGCTGGT GCTGTCGCGC CTGGCCGACT ACATCGAAAG CCGCAACGCG
CTGACCTCCA AGATCAAGCT GGCCTTCACC TATCCGGCCA TCGTCACGGT GGTGGCCTTC
GCCATCGTGA TCTTCCTGCT GTCGTACGTG GTGCCGCAGG TGGTGAGCGT GTTCGCCAAC
ACCAAGCAGA AGCTGCCGAC GCTGACCATC ATCATGCTGT GGCTGTCGGA TTTCGTGCGC
AACTGGGGAT GGCTGGCGGC GATCGTGCTG GCGGCGCTGG GGCTGCTGGT GCGCAAGCTG
CTCCAGCAGC CGGCGCTGCG GCTGTCGTGG CATCGCTGGC TGCTGACCGC GCCGCTGTTC
GGCAAGCTGG TCCGCGGCTA CAACACGGCG CGCTTTGCCA GTACGCTGGC CATCCTGAGC
AGCGCCGGCG TGCCGATCCT GCGCGGCCTG CAGGCCGCCG GGGAAACGCT CAACAATGTC
GCGCTCAAGA CCAACGTCGA GGATGCGGCC ACGCGTGTGC GGGAAGGCAC GTCGCTGGCG
CGGGCGCTGG CGGCGCAGAA CCAGTTTCCG CCGGTGCTGG TGCACCTGAT CCGCTCGGGC
GAGGCGACCG GCAACCTGCC GGCCATGCTG GAACGCGCGG CGCAAGGCGA GGCGCAGGAG
CTGGAGCGGC GCACGCTGTT CCTGACCGGG CTGCTCGAAC CCGCGCTGAT CCTGACGATG
GGGGTGGTGG TGCTGCTGAT CGTGCTGGCG GTGCTGATGC CGATCATCGA GATCAATCAG
CTGGTGCACT GA
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| Protein sequence | MPAFRYEAAD ASGRTDRGVI EADSARQART ALRARGLTPL VVDALGAQAA KRAGSRFGKR
LSPQENALVT RQLASLLVAG LPLDEALAAL ADQAERPYVH ELLASIRAEV VGGSSLSVAL
AQHPRDFPDI YRALVSAGEH SGNLGLVLSR LADYIESRNA LTSKIKLAFT YPAIVTVVAF
AIVIFLLSYV VPQVVSVFAN TKQKLPTLTI IMLWLSDFVR NWGWLAAIVL AALGLLVRKL
LQQPALRLSW HRWLLTAPLF GKLVRGYNTA RFASTLAILS SAGVPILRGL QAAGETLNNV
ALKTNVEDAA TRVREGTSLA RALAAQNQFP PVLVHLIRSG EATGNLPAML ERAAQGEAQE
LERRTLFLTG LLEPALILTM GVVVLLIVLA VLMPIIEINQ LVH
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