| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3115 |
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| Symbol | gspE |
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| ID | 1221979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3352592 |
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| End bp | 3354193 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637239533 |
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| Product | general secretion pathway protein E |
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| Protein accession | NP_521236 |
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| Protein GI | 17547834 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.59067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCTG AGACGATCCA CGCGGCCGGA AAGGCGGTGA ACATCATGGC AACGCAAGCT
TCTTCCACTG ACGCGCGCAC GCTCGAGCCG CCGTCGCCCT CGGCGGTGCG GCTGGTGCCG
TATGTGTTCG CGCGCGACGC CAGGCTGCTG GTGGCGCGGC AGGATGTCGA CTCGCTCGAG
GTGTGGGTCT GCCCCGAGAC CTCGCGCGCC GCGCTGGCCG AGCTGGCCCG CGTGTTCGGC
GCGCTGCGCC TGGTGAGCCT GGACGCCGCC GCGCTCTCCG CCGCCACGCA GACGGCCTAC
AACGCCCAGG ACGGCAGCGC GGCCCAGGTG GTCGGCGAGG TCGAGGGCGA GGTGGACCTG
TCGCGCCTGA TGCAGGACAT CCCGGCCGTG GAAGACCTGC TCGAATCGGA AGACGACGCG
CCGATCATCC GCATGATCAA CGCGCTGCTC ACGCAGGCCG CACGCGAGGG CGCCTCGGAC
ATCCACATCG AGCCGTTCGA GAACGCCTCG GTGGTGCGCT TCCGCGTGGA CGGCACGCTG
CGCGACGTGG TGCGCCCGAA GAAGGCGCTG CACGGCGCGC TGATCTCGCG CATCAAGATC
ATGGCGCAGC TCGACATCGC CGAGAAACGC CTGCCGCAGG ACGGCCGCAT CACGCTGCGC
GTGGGCGGGC GACCGGTGGA CGTGCGTGTC TCCACCCTGC CGACCGGCCA CGGCGAGCGC
GCGGTGCTGC GCCTGCTCGA CAAGGAAGCC GGCCGGCTTG ACCTCGGCAA GCTCGGCATG
GGCGCCGGCA CGCTGGGGCG CTTCGACCGC CTGATCAACC AGCCGCACGG CATCGTGCTC
GTCACCGGCC CGACCGGCTC GGGCAAGACC ACCACGCTGT ATGCCGCGCT GTCGCGGCTC
GATGCCAGCA GCACCAACAT CATGACGGTG GAGGACCCGA TCGAGTACGA CCTGGACGGT
ATCGGCCAGA CCCAGGTCAA CGCGAAGATC GACATGACCT TCGCCAAGGC CCTGCGCGCC
ATCCTGCGGC AGGACCCGGA CGTGGTGATG ATCGGCGAGA TCCGCGACCT GGAGACCGCG
CAGATCGCGG TGCAGGCCTC GCTGACCGGC CACCTGGTGC TGGCGACGCT GCACACCAAC
GATTCGGCCT CGGCGGTCAC GCGGCTGATC GACATGGGGA TCGAGCCGTT CCTGCTGTCG
TCGTCGCTGC TGGGCGTGCT GGCGCAGCGG CTGGTGCGGC GCCTGTGCGT GCACTGCCGC
CGCGAGGAAG TGCTGGAGCT CACCCCCACC GAGATCGAGG CCGTGGCCGG CACGCCGCCC
GCCGACGGCA CCGCCGCCGC CGTGCCGACG CGCCGCTCGG TGTGGCACCA CGTCGGCTGC
GAGCACTGCG GCCAATCGGG CTACCAGGGC CGGACCGGCG TGTACGAGCT GCTGACGGTG
ACGCCCGAGA TCCAGACCAT GATCCACCGC CAGGCGCCCG AGTCCGAGAT CAAGGCGCTC
GCCATCGGCC AGGGCATGCA TACCATGCGC GCGGATGCGC AGCGGTGGCT GGACGCGGGC
GCGACGTCGC TGGAAGAGGT GCTGCGCGTG ACGCGCGATT GA
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| Protein sequence | MAAETIHAAG KAVNIMATQA SSTDARTLEP PSPSAVRLVP YVFARDARLL VARQDVDSLE
VWVCPETSRA ALAELARVFG ALRLVSLDAA ALSAATQTAY NAQDGSAAQV VGEVEGEVDL
SRLMQDIPAV EDLLESEDDA PIIRMINALL TQAAREGASD IHIEPFENAS VVRFRVDGTL
RDVVRPKKAL HGALISRIKI MAQLDIAEKR LPQDGRITLR VGGRPVDVRV STLPTGHGER
AVLRLLDKEA GRLDLGKLGM GAGTLGRFDR LINQPHGIVL VTGPTGSGKT TTLYAALSRL
DASSTNIMTV EDPIEYDLDG IGQTQVNAKI DMTFAKALRA ILRQDPDVVM IGEIRDLETA
QIAVQASLTG HLVLATLHTN DSASAVTRLI DMGIEPFLLS SSLLGVLAQR LVRRLCVHCR
REEVLELTPT EIEAVAGTPP ADGTAAAVPT RRSVWHHVGC EHCGQSGYQG RTGVYELLTV
TPEIQTMIHR QAPESEIKAL AIGQGMHTMR ADAQRWLDAG ATSLEEVLRV TRD
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