Gene RSc3109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3109 
SymbolgspJ 
ID1221973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3345352 
End bp3346074 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content72% 
IMG OID637239527 
Productgeneral secretory pathway J transmembrane protein 
Protein accessionNP_521230 
Protein GI17547828 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4795] Type II secretory pathway, component PulJ 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain
[TIGR01711] general secretion pathway protein J 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.388678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCAA TCTCTTCTGA CCGCGTGCGC GGCTTCACCC TGCTCGAGCT GCTGGTGGCG 
ATCACGCTGC TGGCGATCCT GGCCGTGCTG GCCTGGCGCG GGCTGGACAG CATGACGCGC
ACGCACGAAG CGCTGGCCCA GCGCGACGAG CGCATCGAGG CCCTGAAGAC GGCCTATGCG
CAGTTCGATG CCGACTGCAC GCAACTGGCC GATCCGTCCA CGCTGGCGCG CCCGCCGGTG
GAGGTCGATG CCGACCGCGT GCTGCTGGTG CGTGACCGGC GCGACGACGG GCAGCCGCCG
GCCTGGCAGG TGGTGCTGTA TCGCGCCGTC AACGGACGGC TGGAGCGTTT GCAGAGCGCG
CCCATCACCA ACCGCAGCGA CCTGCGCGGC GCGCTCGACA GCCTGCGCCA GGGCGGCGCC
AATGCGGCCG TCTACAAGCT GGCCGACGCG GTGGACGGCA TCGCCGCCCG CGCCTGGATC
GAGCCGGGCG GCTGGATGGA CAACACCGGC GCCCTGTCGG CGGCGCTGTT CCCGGGCGGC
AGCAACACCA CCACGCTGGC GGAGCTGTCG TCGGCGTCCG CGGCCAGTGC ATCGGCCGTC
GCCGCCACCA GCGTGGTGGT GCCGGTGGCC ACGGTGCGGG CCGTGGAGTT GGCGCTGCTG
GTGCGCATGA CACCGCAAGG CACGCCGCAG CGCTTTACGC GCATCTGCAT GACGGGGCTC
TGA
 
Protein sequence
MRAISSDRVR GFTLLELLVA ITLLAILAVL AWRGLDSMTR THEALAQRDE RIEALKTAYA 
QFDADCTQLA DPSTLARPPV EVDADRVLLV RDRRDDGQPP AWQVVLYRAV NGRLERLQSA
PITNRSDLRG ALDSLRQGGA NAAVYKLADA VDGIAARAWI EPGGWMDNTG ALSAALFPGG
SNTTTLAELS SASAASASAV AATSVVVPVA TVRAVELALL VRMTPQGTPQ RFTRICMTGL