Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3078 |
Symbol | |
ID | 1221941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3314560 |
End bp | 3315228 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637239495 |
Product | response regulator transcription regulator protein |
Protein accession | NP_521199 |
Protein GI | 17547797 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0498276 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGCCC CCGTCCGATT CGCGATCGCA GACGATCATC CCGGCGTGGT GGCCGCCGTG CGGCATCTCG TCTGCCGCGT CGAGGGCTTC GAAGTGGTCG GCGAAGCCAC CAGCGCGGAT GGACTGCTCG CCCTGCTGGG GCGCGTGCAC TGCGATGTGG TCATCACCGA CTACGCCATG CCGGCCAGCC GCCACGGCGA CGGCATCGTC CTGCTCGAAT TCCTGCTGCG GCGCCATCCC GGGGTGCGCG TCGTGGTGCT GACCATGCTG GAAACCCACG CGGTGGTGGA CCGCATGCTG CGCGCCGGCA TTCGGGTCAT CGCCAGCAAG GCCGACAGCC CGCACCATAT CCTGGAGGGC GTCCATGCCG CGCTGGCAGG CCGCGCCTAC CTGTCGCCAC GGTTCGGGCC CCGGCTGGAC AGCGCCCACC CCGGACACGC CCCCGACGAC CACGGCGCGC TCGATCGGCT CGGCAAGCGC GAACTCGAAG TCCTGCGCAT GTATGTCGGC GGCGAGACCG TCAGCGAGAT CGCCAGGCGG CTCAACCGCA GCGTCAAAAC GATCAGCGCG CAGAAGCAGA AGAGCATGCG CAAGCTCAGG CTGGCCACCG AGGCGGCGCT GTTCGACTTC GCCGCGCAGC ATGGCCTGCT CGGCACCACC GGGCGCTGA
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Protein sequence | MQAPVRFAIA DDHPGVVAAV RHLVCRVEGF EVVGEATSAD GLLALLGRVH CDVVITDYAM PASRHGDGIV LLEFLLRRHP GVRVVVLTML ETHAVVDRML RAGIRVIASK ADSPHHILEG VHAALAGRAY LSPRFGPRLD SAHPGHAPDD HGALDRLGKR ELEVLRMYVG GETVSEIARR LNRSVKTISA QKQKSMRKLR LATEAALFDF AAQHGLLGTT GR
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