Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2999 |
Symbol | secY |
ID | 1221853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3229331 |
End bp | 3230677 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637239407 |
Product | preprotein translocase subunit SecY |
Protein accession | NP_521120 |
Protein GI | 17547718 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0201] Preprotein translocase subunit SecY |
TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0377089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.071315 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGCCACGG CGAAACCTAA TGTGATGGCG CAGGCCAAGA ACACGGCCAA GTACGGCGAT CTTCGCCGTC GGCTGGTGTT CTTGGTCCTG GCACTGCTGG TGTACCGGAT CGGCGCGCAC ATCCCTGTGC CTGGCATCGA TCCGGACCAA CTGGCGCAGC TTTTCCAACG GCAGTCGGGT GGCATCCTCG GGATGTTCAA CCTGTTCTCC GGCGGCGCGC TCTCGCGCTT CACGGTATTT GCGCTGGGGA TCATGCCGTA TATCTCGGCA TCGATCATCA TGCAGCTGCT GACGATCGTG TTGCCGCAGC TGGAGTCGCT GAAGAAGGAA GGGCAGGCTG GCCAGCGCAA GATTACGCAA TACACGCGCT ACGGTACGGT CGTCCTGGCG ACTTTCCAGG CGCTGGGCAT CGCGGTGGCG CTTGAGGCGC AGCCTGGTCT GGTGCTGGAC CCGGGCCTGA TGTTCCGGGC GACGGCCGTG ATCACGCTGG TGACGGGCAC GATGTTCCTG ATGTGGCTGG GTGAGCAGAT CACCGAGCGC GGTCTGGGCA ACGGCATCTC GATCATCATC TTTGGCGGGA TCGCAGCAGG GTTGCCCAAC GCCATCGGCG GGCTGTTCGA ACTGGTGCGC ACGGGGTCGA TGGGAATTTT CTCCGCGATT CTGGTAGTGG CGATCATTGG CGCGGTGACG TTCCTGGTGG TGTTCATCGA ACGCGGCCAG CGCAAGATCC TCGTCAACTA TGCCAAGCGG CAGGTCGGTA ACAAGATCTA TGGCGGTCAG TCGTCGCATC TGCCGCTGAA GTTGAACATG GCTGGGGTGA TTCCGCCGAT CTTCGCATCG TCGATCATTC TGTTCCCGGC CACGATCGCG GGCTGGTTCA CTGCCGGCAA CTCGACGAAT CCGGTTGCAC GGTTCGTCAA GGATCTGGCG TCGACGCTGT CGCCGGGCCA GCCGGTGTAC ATCCTGCTGT ATGCGGCGGC AATCATCTTC TTCTGCTTCT TCTACACCGC GCTGGTCTAT AACAGCCGCG AAGTGGCGGA TAACCTGAAG AAGAGTGGGG CGTTCATTCC GGGGATCCGC CCGGGTGAGC AAACCACGCG GTATATCGAC AAGATTCTGG TGCGTCTGAC CCTGGCTGGT GCGATTTACA TCACGCTGGT GTGTCTGTTG CCGGAGTTCT TGGTACTGCG CTGGAACGTG CCGTTCTACT TCGGTGGAAC GTCGCTGCTG ATCATCGTGG TTGTCACGAT GGACTTCATG GCGCAGGTGC AGTCGTACGT GATGTCTCAG CAGTACGAGT CTTTGATGAA GAAGGCGAAT TTCAAGGGCA ACCTGACGCT CCGTTAG
|
Protein sequence | MATAKPNVMA QAKNTAKYGD LRRRLVFLVL ALLVYRIGAH IPVPGIDPDQ LAQLFQRQSG GILGMFNLFS GGALSRFTVF ALGIMPYISA SIIMQLLTIV LPQLESLKKE GQAGQRKITQ YTRYGTVVLA TFQALGIAVA LEAQPGLVLD PGLMFRATAV ITLVTGTMFL MWLGEQITER GLGNGISIII FGGIAAGLPN AIGGLFELVR TGSMGIFSAI LVVAIIGAVT FLVVFIERGQ RKILVNYAKR QVGNKIYGGQ SSHLPLKLNM AGVIPPIFAS SIILFPATIA GWFTAGNSTN PVARFVKDLA STLSPGQPVY ILLYAAAIIF FCFFYTALVY NSREVADNLK KSGAFIPGIR PGEQTTRYID KILVRLTLAG AIYITLVCLL PEFLVLRWNV PFYFGGTSLL IIVVVTMDFM AQVQSYVMSQ QYESLMKKAN FKGNLTLR
|
| |