| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2971 |
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| Symbol | pilQ |
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| ID | 1221825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3203114 |
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| End bp | 3205258 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637239379 |
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| Product | fimbrial type-4 assembly signal peptide protein |
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| Protein accession | NP_521092 |
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| Protein GI | 17547690 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGC GTCGCGTGAA GGGCGGCCTG GTGCAGGCCG TTCGAGTGGC CCGGGGGGGC
GCAGTGGCAT GGCTTTCGCT GTGCATGCTG ATGGTGGGTG GACAGGCGTT GGCCCAGCAG
GCAATCACGG CGCCGGCAAG CAATGCCGTC GAACGCGTGG AACAAGCCTC GACAGGCGAA
TCCACCGTGG TGACGGTGAC GCTGAAGGAC ACGCCCGCCC AGAAGCCGGT GGAATTCAGC
ACGCAGCAGC CTGCGCGCAT CGCCATCGAC TTCTTCGGCA CGGCATTCGC CCAGGGGCGT
GCCAACTATC AATATGGCGG CAAGCTGCTG CGCGCGGCCA GCGTGGTGCA GATCGGTGAC
CGCACCCGCG TCGTGCTGGA TCTGGCGCGC CAGTCGCAGT ACAAGTCCGA GATCCGGGGC
AACCAGTACG TGCTGACGCT GGGCGCCGCG CCGACGGCGT CGGCCACCCC GGTGCCGACC
TTCGCCGCGC CCGCGCCGAC GGCCGGTGTG GAGCGGCCGT CCGTGCGCAA CATCGACTTC
CGCCGTGGCG AAGAACTGGC CGGCCGCGTG GTGGTCGACC TGTCGACGTC CAACTCCGCG
ATCAACATCG CTCAGCAGGG GCAAAACCTG GTGGTCGATT TCGCCGGTGC CACGCTGCCG
CAATCGCTGC GTCGCCGCTT TGACGTGAGC GACTTCGGCA CGCCGGTGCA GGCCATGCGC
GCCACCGACA ACGGCACGGG CGCTCGCCTG GTCATCGAGC CGCGCGGCAA CTGGCAGTAC
AGCTCGTACC AGACCGACAC GCAGTTCGTG GTGGAAGTCC GCCCGACCAA GGAGGACCCG
AACAAGCTGA TCTCCGGTCC GGGCTATCGC GGGGAGCGCA TGTCGCTGAA CTTCCAGAAC
ATCGACATTC GTTCGCTGCT GCAGGTCTTT GCCGACTTCA CCAACCTGAA CATCGTCACC
AGCGACAGCG TGACGGGGAC CCTGTCGCTG CGTCTGAAGG ACGTGCCGTG GGATCAGGCG
CTGCAGATCG TGCTGGATTC CAAGGGCCTG GCCTCGCGCC GCAACGGCAA CGTGCTGTGG
GTGGCGCCGC GCAACGAACT GGCGACCAAG GAGAAGGCTG AGCTGGAGTC GCAGCAACAG
GTGACCGAGC TGGAGCCGCT GCGCAGCCAG GTGTTCCGTC TGAATTACCA GCGTGCTGAC
GACGTGCGCA ACATGCTGCT GGGTACCGGA GGAACGGCGG GCGGTGGTGC TGCGGCGTCG
CGCATCTTGT CCAAGCGTGG CTCGCTGACG TCGGATGCCC GTACCAACCA GCTGTTCGTC
TCGGATATCC CGAGCAAGCT GGAGGAGGTG CAGGCCTTCC TGCTGAAGAT CGACATCCCG
GTGCGTCAGG TGATGATCGA GGCGCGCATC GTCGAGGCCG ATGACACGTT CAGCCGCAAT
CTTGGGGCAA AGCTGGGCTT CGCGGCCAAG ACCAATGGTG CCGGGTATGG CAACACCTAC
AGCAACGTGG TGTCGCCGGT CACGAAAGAC GCTACTTGGG ATAACAGCGC GGCCGTCAGC
CTGCCCGCCA ATGGCATCAA CGGTGTGAAC GCCGCCAGTG TGGCAGTGAG CTTGTTCAAC
GCCGGTGCCG GCCGTTTCCT GGCGCTCGAA CTGTCGGCGC TGGAAGCCGA TGGCCGCGGC
AAGATCATCT CCAGCCCGCG TGTGGTCACC GCTGACAACA TCAAGGCGCT GATCGAGCAG
GGTACCGAAG TGCCTTACCA GCAGGCGACC TCGTCGGGTG CGACGTCGGT TTCGTTCAAA
AAGGCCAACC TGAAATTGGA GGTGACGCCG AAGATTACGC CGGACGGCAA CGTGTTCCTG
GACGTGGACG TCAACAAGGA CAGCCTGGGC ACGCAGACCA CCAACGGCTT CGCCATCAAC
ACCAAGCATG TGCAGACCCA GGTGTTGGTC GAGAACGGCG GTACGGTTGT GATTGGCGGC
ATCTACACGC AGAACGAACG GACCGATGTG AACAAGGTCC CGCTGCTGGG TGACATCCCG
GTGCTGGGCA ACCTGTTCAA GAGCACGGCC AAGACCAACG ACCGGACGGA ACTGCTGGTG
TTCCTGACGC CGCGCGTGCT GTCCGACCAG CTGTCGCTGA AGTAA
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| Protein sequence | MTMRRVKGGL VQAVRVARGG AVAWLSLCML MVGGQALAQQ AITAPASNAV ERVEQASTGE
STVVTVTLKD TPAQKPVEFS TQQPARIAID FFGTAFAQGR ANYQYGGKLL RAASVVQIGD
RTRVVLDLAR QSQYKSEIRG NQYVLTLGAA PTASATPVPT FAAPAPTAGV ERPSVRNIDF
RRGEELAGRV VVDLSTSNSA INIAQQGQNL VVDFAGATLP QSLRRRFDVS DFGTPVQAMR
ATDNGTGARL VIEPRGNWQY SSYQTDTQFV VEVRPTKEDP NKLISGPGYR GERMSLNFQN
IDIRSLLQVF ADFTNLNIVT SDSVTGTLSL RLKDVPWDQA LQIVLDSKGL ASRRNGNVLW
VAPRNELATK EKAELESQQQ VTELEPLRSQ VFRLNYQRAD DVRNMLLGTG GTAGGGAAAS
RILSKRGSLT SDARTNQLFV SDIPSKLEEV QAFLLKIDIP VRQVMIEARI VEADDTFSRN
LGAKLGFAAK TNGAGYGNTY SNVVSPVTKD ATWDNSAAVS LPANGINGVN AASVAVSLFN
AGAGRFLALE LSALEADGRG KIISSPRVVT ADNIKALIEQ GTEVPYQQAT SSGATSVSFK
KANLKLEVTP KITPDGNVFL DVDVNKDSLG TQTTNGFAIN TKHVQTQVLV ENGGTVVIGG
IYTQNERTDV NKVPLLGDIP VLGNLFKSTA KTNDRTELLV FLTPRVLSDQ LSLK
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