Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2933 |
Symbol | |
ID | 1221787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3163636 |
End bp | 3164775 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637239341 |
Product | putative porin signal peptide protein |
Protein accession | NP_521054 |
Protein GI | 17547652 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATGA AACTGTTTGC AGCTGCTGTT GCAGCTCTGG CCGCCGGTGG CGCCTACGCT CAATCGTCCG TGACTCTGTA CGGTGTGGCC GACGTCGGCG TGGAATGGGC CAACAAGGTG CCGGGCGCTG ACGGCCAAGG CCATTCGCGC GTTGCAATGC AGTCGGGCAA CCTGTCCGGC TCGCGCTGGG GCCTGCGTGG CGTTGAAGAC CTGGGCGGTG GCCTGAAGGG TATCTTCAAC CTGGAAAGCG GCTTCAACCT CGATACCGGC ACGTCGGCCC AAAGCAGCCG TCTGTTCGGC CGTAACGCCT ACGTCGGTCT GCAAGGTCAA TGGGGTCAGC TGACCCTGGG CCGTCAGCAA AACCTGCTGT ACGACTTCGC ACTGGCCTAT GACCCGATGG CCATCGCTGG CCGTTACTCG ATCACGGCAC AAGACGCCTT CATGGCTGGC CGTGCTGACA ACGCCATCAA GTACATCGGC ACGTTCGGTG GCCTGAGCGT TTCGGCTCTG TATGCGTTCA ACCGCGACGG CCAAGAAGTT GCCGGCGTGA ACAAGCTGGG CCGCGAGTGG AGCCTGGGTG CAAACTACGC TGCTGGCCCG TTCGGCCTGG GTGTGGTGTA TGACCAATCG AATGGCACGG CAGCGTCGAA CGCTTCGTTC GCTGCTCAGA ACGCTGCGGC TGACACCAAG GAACAACGCG CCACGATCGC TGGCTCGTAC GCCTTCGGCC CGGCCAAGCT GTACGCTGGC TATCGTTGGT ACCACGCCAA CTTCGCAACG GTTGCCGGCG CTGGCAACCT GCGTTCGAAC CTGTACTGGC TGGGTGCTGG CTACCAAGCT ACGCCGGCTC TGACGCTGAC GGGCACGGCT TACTACCAAC AGTTCAAGAA CAGCGGTACG GGTAACCCGT GGCTGTTCGT TGTCGGTACC GACTACGCGC TGTCCAAGCG CACCGATGCC TACTTCAACG TCGCCTACGC TAAGAACAGC AATGGCTCGA CGCTGGGTGT GGCCGGCATC AACGGCGCTT CGTCGGGTAA CGCGACGACG CTGCAATCGA CCGACAACCA AGTTCTGTCG AACTCCACCA ACACCGGCAA CCAGTTCGGT GCTGTGGTTG GTATCCGCCA CAAGTTCTAA
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Protein sequence | MKMKLFAAAV AALAAGGAYA QSSVTLYGVA DVGVEWANKV PGADGQGHSR VAMQSGNLSG SRWGLRGVED LGGGLKGIFN LESGFNLDTG TSAQSSRLFG RNAYVGLQGQ WGQLTLGRQQ NLLYDFALAY DPMAIAGRYS ITAQDAFMAG RADNAIKYIG TFGGLSVSAL YAFNRDGQEV AGVNKLGREW SLGANYAAGP FGLGVVYDQS NGTAASNASF AAQNAAADTK EQRATIAGSY AFGPAKLYAG YRWYHANFAT VAGAGNLRSN LYWLGAGYQA TPALTLTGTA YYQQFKNSGT GNPWLFVVGT DYALSKRTDA YFNVAYAKNS NGSTLGVAGI NGASSGNATT LQSTDNQVLS NSTNTGNQFG AVVGIRHKF
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