Gene RSc2933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2933 
Symbol 
ID1221787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3163636 
End bp3164775 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content61% 
IMG OID637239341 
Productputative porin signal peptide protein 
Protein accessionNP_521054 
Protein GI17547652 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGA AACTGTTTGC AGCTGCTGTT GCAGCTCTGG CCGCCGGTGG CGCCTACGCT 
CAATCGTCCG TGACTCTGTA CGGTGTGGCC GACGTCGGCG TGGAATGGGC CAACAAGGTG
CCGGGCGCTG ACGGCCAAGG CCATTCGCGC GTTGCAATGC AGTCGGGCAA CCTGTCCGGC
TCGCGCTGGG GCCTGCGTGG CGTTGAAGAC CTGGGCGGTG GCCTGAAGGG TATCTTCAAC
CTGGAAAGCG GCTTCAACCT CGATACCGGC ACGTCGGCCC AAAGCAGCCG TCTGTTCGGC
CGTAACGCCT ACGTCGGTCT GCAAGGTCAA TGGGGTCAGC TGACCCTGGG CCGTCAGCAA
AACCTGCTGT ACGACTTCGC ACTGGCCTAT GACCCGATGG CCATCGCTGG CCGTTACTCG
ATCACGGCAC AAGACGCCTT CATGGCTGGC CGTGCTGACA ACGCCATCAA GTACATCGGC
ACGTTCGGTG GCCTGAGCGT TTCGGCTCTG TATGCGTTCA ACCGCGACGG CCAAGAAGTT
GCCGGCGTGA ACAAGCTGGG CCGCGAGTGG AGCCTGGGTG CAAACTACGC TGCTGGCCCG
TTCGGCCTGG GTGTGGTGTA TGACCAATCG AATGGCACGG CAGCGTCGAA CGCTTCGTTC
GCTGCTCAGA ACGCTGCGGC TGACACCAAG GAACAACGCG CCACGATCGC TGGCTCGTAC
GCCTTCGGCC CGGCCAAGCT GTACGCTGGC TATCGTTGGT ACCACGCCAA CTTCGCAACG
GTTGCCGGCG CTGGCAACCT GCGTTCGAAC CTGTACTGGC TGGGTGCTGG CTACCAAGCT
ACGCCGGCTC TGACGCTGAC GGGCACGGCT TACTACCAAC AGTTCAAGAA CAGCGGTACG
GGTAACCCGT GGCTGTTCGT TGTCGGTACC GACTACGCGC TGTCCAAGCG CACCGATGCC
TACTTCAACG TCGCCTACGC TAAGAACAGC AATGGCTCGA CGCTGGGTGT GGCCGGCATC
AACGGCGCTT CGTCGGGTAA CGCGACGACG CTGCAATCGA CCGACAACCA AGTTCTGTCG
AACTCCACCA ACACCGGCAA CCAGTTCGGT GCTGTGGTTG GTATCCGCCA CAAGTTCTAA
 
Protein sequence
MKMKLFAAAV AALAAGGAYA QSSVTLYGVA DVGVEWANKV PGADGQGHSR VAMQSGNLSG 
SRWGLRGVED LGGGLKGIFN LESGFNLDTG TSAQSSRLFG RNAYVGLQGQ WGQLTLGRQQ
NLLYDFALAY DPMAIAGRYS ITAQDAFMAG RADNAIKYIG TFGGLSVSAL YAFNRDGQEV
AGVNKLGREW SLGANYAAGP FGLGVVYDQS NGTAASNASF AAQNAAADTK EQRATIAGSY
AFGPAKLYAG YRWYHANFAT VAGAGNLRSN LYWLGAGYQA TPALTLTGTA YYQQFKNSGT
GNPWLFVVGT DYALSKRTDA YFNVAYAKNS NGSTLGVAGI NGASSGNATT LQSTDNQVLS
NSTNTGNQFG AVVGIRHKF