| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2825 |
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| Symbol | pilB |
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| ID | 1221673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3038520 |
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| End bp | 3040247 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637239227 |
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| Product | type IV pilus assembly protein |
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| Protein accession | NP_520946 |
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| Protein GI | 17547544 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00509282 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0351792 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTCG GACTCTCTCT TGCGCAGAGC CGGCGAATTG CGCCGACATT ACTCACCCAG
CTAGAACAAA GCGCCCGCGA AAAGCGCACG CAGCTGATCG ACGAACTGGT GAGCAGCGGC
ATCATGAGCG CTCATGATCT CGCCGTCTTC GTGGCGGGCA AATACCAGAT GCCGCTGCTG
GACCTGGCGC AATACAAGCT CGACACCGTG CCGCCTGTGC TGTCGGCCAA CAGGCATTTT
CAGCAGTTGC GCCTGTTGCC GCTGGGCCGG CGTGACAACC GCATCATCGT GGCCACTTCG
GACCCGAGCG ACCCCAAGCC GCTCGAGGAA CTGCGCCAGA AGATGAACGT GGCGATCGAG
ACGGTCATCG TCGAGCACGA CAAGCTGGTG CGCCAGCTGA GCCTCTCCAA CGAGGCACCG
GCCGAGATCA AGTCGCTCAT CCCCAAGCAG GAAACCACGC AGATCGAATA CGACCCGGGT
GCGGCCGCGG CGGTCCGCCG CACCCCGACC GACGGCATCG ACGATGCGCC GGTGGTGCGC
TTCCTGCAGA AGCTGTTTAC CGAGGCGCTG CTGCGCGGCA CCTCCGACTT GCATTTCGAG
CCGTTTGAAA CGTTTTACCG CGTGCGCTTC CGCATCGACG GCATCCTCGA GCAGGTCGCG
CAGCCGCCGC TGGACATCCG CGACAAGATC GCCACCCGCA TCAAGGTGCT GTCGCGCCTG
GACATATCGG AAAAGCGCGT GCCGCAGGAC GGCCGCATGA AGCTCCTGAT CACCGTTCCG
AAAGACAAGA ACGACAAGGA CAACAAGGAG ATGGTCGAGC GCGCTATCGA CTTCCGGGTG
TCGACGCTGC CGACGCTCTT CGGCGAGAAG ATCGTGATCC GGATTCTGGA GTCCTCGACC
GAGCGGCTCG ATATCGACCA GCTCGGCTAT GAGCCCGAGC AGAAGCAGCT CCTGCTGGAC
GTGATCAAGC GCCCCTACGG CATGGTGCTG GTGACCGGCC CGACCGGTAG CGGCAAGACG
GTGTCGCTGT ACACCTTCCT GAACAAGCTG AACCAGGGCG ACATCAACAT TTCCACCGCG
GAAGACCCGG CGGAAATCCA GTTGCCCGGC ATCAACCAGG TCAACGTCAA CGACAAGGCG
GGGCTGACCT TCGCCGCGGC GCTGAAGTCC TTTCTGCGGC AGGATCCCGA CATCATCATG
GTGGGCGAAA TCCGGGACCT GGAAACCGCC GACATCTCCA TCAAGGCCGC GCAGACCGGC
CACTTGGTGT TCTCCACGCT GCACACCAAC GACGCGCCGA CCACGCTGAC ACGCCTGATG
AACATGGGCG TGGCGCCATT CAACATCGCA TCGTCGGTGC TGATGATCAC GGCGCAGCGT
CTGGGGCGGC GCCTGTGCAA GGCCTGCAAG AAGCCGGGTC CGCTGCCCAA GGAAACGCTG
CTGGACGCGG GCTTCAAGGA AGCAGACCTG GACGGCTCGT GGCAGCCGTA CCATCCGGTC
GGCTGCGAGG CATGCAACGG CAGCGGCTAC AAGGGCCGGG TCGGCATCTA CCAGGTCATG
CCGATCACCG AGGCGATCCA GGAGATCATC CTCGCCCACG GCACGGCGCT GCAGATCGCC
GAACAGGCGC GCAAGGAAGG CGTGCTCTCG CTGCGCGATT CCGGCCTGCG GAAAGTGAAG
CAGGGGCTGA CTTCCCTTGA GGAAGTGTTG GCCACGACCA ACCAGTAA
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| Protein sequence | MTLGLSLAQS RRIAPTLLTQ LEQSAREKRT QLIDELVSSG IMSAHDLAVF VAGKYQMPLL
DLAQYKLDTV PPVLSANRHF QQLRLLPLGR RDNRIIVATS DPSDPKPLEE LRQKMNVAIE
TVIVEHDKLV RQLSLSNEAP AEIKSLIPKQ ETTQIEYDPG AAAAVRRTPT DGIDDAPVVR
FLQKLFTEAL LRGTSDLHFE PFETFYRVRF RIDGILEQVA QPPLDIRDKI ATRIKVLSRL
DISEKRVPQD GRMKLLITVP KDKNDKDNKE MVERAIDFRV STLPTLFGEK IVIRILESST
ERLDIDQLGY EPEQKQLLLD VIKRPYGMVL VTGPTGSGKT VSLYTFLNKL NQGDINISTA
EDPAEIQLPG INQVNVNDKA GLTFAAALKS FLRQDPDIIM VGEIRDLETA DISIKAAQTG
HLVFSTLHTN DAPTTLTRLM NMGVAPFNIA SSVLMITAQR LGRRLCKACK KPGPLPKETL
LDAGFKEADL DGSWQPYHPV GCEACNGSGY KGRVGIYQVM PITEAIQEII LAHGTALQIA
EQARKEGVLS LRDSGLRKVK QGLTSLEEVL ATTNQ
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