| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2805 |
|---|
| Symbol | nrdA |
|---|
| ID | 1221652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3015477 |
|---|
| End bp | 3018440 |
|---|
| Gene Length | 2964 bp |
|---|
| Protein Length | 987 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637239206 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | NP_520926 |
|---|
| Protein GI | 17547524 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit
[COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.214099 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACGG CCCAAACAGA AATCCACTCC GGCACCGCCA ATCCCACCGC GTTTTCGCAA
CCTGCCGAGG GCACGGCCGT GGCCTCCGGC GCCGGCTACG CCGACTACAA GATCATCCGC
CGCAACGGCG CCGTGGTCGG CTTCGAGCCC TCCAAGATCG CCGTGGCGAT GACCAAGGCC
TTCCTCGCCG TCAACGGCGG GCAGGGCGCT GCTTCCGCGC GCGTGCGCGA GCTGGTCGAG
GGCCTGACCC AGAACGTGGT GCGCGCGCTG CTGCGCAGCC GTCCGAATGG CGGCACGTTC
CACATCGAGG ATGTGCAGGA CCAGGTCGAA CTGGCCCTGA TGCGCTCGGG CGAGCACGAT
GTCGCCCGCG CCTATGTGCT GTACCGCGAG CGCCGCTCGC AGGAGCGCGC ACAGGCGGGC
GAGACGCAGC AGCAGCCGGC CTTCATCGGC CTGAACGTGA CGGACGGCGG CATCACCCGC
CCGCTCGACA TGGCGGCGCT GCGCAACCTG ATCGTGTCGG CCTGCGCGGG CCTGGGCGAG
TCGGTGGATC CGGAGCCGAT CCTCAAGGAG ACCGTCAAGA ACCTGTACGA AGGCGTGCCG
ATGAGCCAGG TGTACGACTC GGCCATCCTG GCCGCGCGGA CCCTGATCGA GAAGGATCCG
GCCTACAGCC AGGCCACCGC ACGCATCCTG CTGCACACGA TCCGCCGTGA AATCCTGGGC
GAGGAAGTCA CCCAGGCCGA GATGGCCGGG CGCTATGCCG ATTACTTCCC GCAGTTCATC
AAGCGCGGCA TCAACGCCGG CCTGCTGGAC GACACGCTGG CCCAGTTCGA CCTGGCCAAG
CTGGGCGCCG CGCTCGACGC CTCGCGCGAC CTGCAGTTCA ACTACCTCGG CCTGCAGACG
CTGTACGACC GCTACTTCCT GCACATCAGC GACAAGCGCA TCGAGATGCC GCAGGCGTTC
TTCATGCGCG TGGCGATGGG CCTGTCGCTC AATGAAATCG ACCGCGAAGC GCGCGCCATC
GAGTTCTACC AGCTGCTGTC GTCGTTCGAC TTCATGTCGT CCACGCCGAC GCTGTTCAAC
TCGGGCACGT GCCGCTCGCA GCTGTCGTCG TGCTACCTGA CCACGGTGTC GGACGACCTG
GACGGCATCT ACGAGGCGCT CAAGGAAAAC GCGCTGCTGT CCAAGTTCGC CGGCGGTCTG
GGCAACGACT GGACCAACGT GCGCGCGCTG GGCTCGCACA TCAAGGGCAC CAACGGCAAG
AGCCAGGGCG TGGTGCCGTT CCTGAAGGTG GTCAACGACA CGGCCGTGGC CGTGAACCAG
GGCGGCAAGC GCAAGGGCGC GGTGTGCGCG TACCTGGAGA CGTGGCACCT GGACATCGAG
GAATTCCTGG AGCTGCGCAA GAACACCGGC GACGACCGCC GCCGCACGCA CGACATGAAC
ACGGCCAACT GGATCCCGGA CCTGTTCATG AAGCGCGTGA TGGAGGGTGG CGAATGGACG
CTGTTCTCGC CGTCCACCTG CCCGGATCTG CACGACAAGG TCGGCAAGGC GTTTGAGGCG
GCTTACCTGG GCTACGAAGA CAAGGTCGCG CGCGGCGAGA TCAAGCTCTT CAAGAAGATG
CCGGCGTTGC AACTGTGGCG CAAGATGCTG GGCATGCTGT TCGAAACCGG CCACCCGTGG
ATCACGTTCA AGGACCCGTG CAACATCCGC AGCCCGCAGC AGCACGTGGG CGTGGTGCAC
AGCTCCAACC TGTGCACGGA GATCACGCTG AACACCAACG ACAGCGAGAT CGCCGTGTGC
AACCTGGGCT CGGTCAACCT GGTCGCCCAC GTGGTCAAGC AAGCCGACGG CAGCTACGCG
CTCGATCACG ACAAGCTCAA GAAGACCGTG CGCACCGCCA TGCGCATGCT CGACAACGTG
ATCGACATCA ACTACTACGC CGTCAAGAAG GCGCGGGACT CCAACCTGCG CCACCGTCCG
GTGGGCCTGG GCATCATGGG CTTCCAGGAC GCGCTGCACG TGCTGCGCAT CCCGTACGCC
ACCGATGCCG CGGTGCAGTT CGCCGACACC TCGATGGAAG CCGTGTGCTA TTACGCCTAC
TGGGCCTCGA CCGAGCTGGC CGAAGAGCGT GGCCGCTACA GCACCTACAA GGGCTCGCTG
TGGGATCGCG GTGTCCTGCC GCAGGACTCG CTCAAGCTGC TGGCGCAGGA GCGCGGCGGT
TATCTGGAGG CCGACCTGTC GTCGACGATG GACTGGGATG GTCTGCGCGA GCGCATCCAG
CAGCACGGCA TGCGCAACTC CAACTGCGTG GCGATCGCTC CGACGGCGAC GATCTCCAAC
ATCATCGGCG TGTCCGCATG CATCGAGCCG ACGTACCAGA ACCTGTACGT CAAGTCGAAC
CTGTCGGGCG AGTTCACGGT GGTCAACGAC TACCTGGTGC GCGACCTGAA GGCACGCGGC
CTGTGGGATG AAGTGATGGT CGCCGACCTG AAGTACTTCG ACGGCTCGCT GGCCCGCATC
GACCGCATCC CGCAAGACCT GCGCGACCTG TACGCGACGG CCTTCGAAGT GGAGCCGCAG
TGGCTGGTGG AGGCCGCCTC GCGCCGCCAG AAGTGGATCG ATCAGGCGCA GTCGCTGAAC
ATCTACATGG CCGGCGCGTC GGGCAAGATG CTGGACGACA CCTACAAGCT GGCGTGGCTG
CGTGGCCTGA AGACCACCTA CTACCTGCGC ACCATCGGCG CGACGCACGT GGAGAAGTCC
ACCGTGTCGC GCGGCACGCT GAACGCCGTG TCGTCGGGCA GCGATGCCGG CAGCGTGGCG
GCGGCGGGTG CCGCGCCGGT GGCCCCGGCC AGCGCGCTGG ACACCGTGGC CGCCACCGCG
CCGGCGATGC CGGATGCCGA AGGCGCCGTG TGCACGATGC GCCCCGGCGA CCCTGGTTTC
GAGGAATGCG AGGCCTGCCA ATAA
|
|---|
| Protein sequence | MQTAQTEIHS GTANPTAFSQ PAEGTAVASG AGYADYKIIR RNGAVVGFEP SKIAVAMTKA
FLAVNGGQGA ASARVRELVE GLTQNVVRAL LRSRPNGGTF HIEDVQDQVE LALMRSGEHD
VARAYVLYRE RRSQERAQAG ETQQQPAFIG LNVTDGGITR PLDMAALRNL IVSACAGLGE
SVDPEPILKE TVKNLYEGVP MSQVYDSAIL AARTLIEKDP AYSQATARIL LHTIRREILG
EEVTQAEMAG RYADYFPQFI KRGINAGLLD DTLAQFDLAK LGAALDASRD LQFNYLGLQT
LYDRYFLHIS DKRIEMPQAF FMRVAMGLSL NEIDREARAI EFYQLLSSFD FMSSTPTLFN
SGTCRSQLSS CYLTTVSDDL DGIYEALKEN ALLSKFAGGL GNDWTNVRAL GSHIKGTNGK
SQGVVPFLKV VNDTAVAVNQ GGKRKGAVCA YLETWHLDIE EFLELRKNTG DDRRRTHDMN
TANWIPDLFM KRVMEGGEWT LFSPSTCPDL HDKVGKAFEA AYLGYEDKVA RGEIKLFKKM
PALQLWRKML GMLFETGHPW ITFKDPCNIR SPQQHVGVVH SSNLCTEITL NTNDSEIAVC
NLGSVNLVAH VVKQADGSYA LDHDKLKKTV RTAMRMLDNV IDINYYAVKK ARDSNLRHRP
VGLGIMGFQD ALHVLRIPYA TDAAVQFADT SMEAVCYYAY WASTELAEER GRYSTYKGSL
WDRGVLPQDS LKLLAQERGG YLEADLSSTM DWDGLRERIQ QHGMRNSNCV AIAPTATISN
IIGVSACIEP TYQNLYVKSN LSGEFTVVND YLVRDLKARG LWDEVMVADL KYFDGSLARI
DRIPQDLRDL YATAFEVEPQ WLVEAASRRQ KWIDQAQSLN IYMAGASGKM LDDTYKLAWL
RGLKTTYYLR TIGATHVEKS TVSRGTLNAV SSGSDAGSVA AAGAAPVAPA SALDTVAATA
PAMPDAEGAV CTMRPGDPGF EECEACQ
|
|---|
| |