| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2693 |
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| Symbol | |
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| ID | 1221540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2898998 |
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| End bp | 2901262 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637239094 |
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| Product | putative outer membrane usher transmembrane protein |
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| Protein accession | NP_520814 |
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| Protein GI | 17547412 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.513198 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTCG CAAACGACGC GCCGGCGCCC AGCCGCACCG CCGCCAGCGA TGTCGCCGAG
CTGCTGCTGC AGTTCGACCT CAACCAGCAG GGCCTGGACG ACACCGTGTT GTTGCTCAAG
ACCAAGGGCG GCGAGCTGTA TGCATCGGCA GAAGACCTCA AGCGCTGGCG CCTGCGCCAG
CCAGAGGCGA CACCGCTGGC CCACAACAAC GAGGTGTTCT ACCCGCTCAA GGCCATCACG
GGGCTGTCGT ATCAGCTTGA CGAGACGCTC TTGACCGTGG CGGTGACGGC ACCGGCGCAG
GCCTTCCTGC CCAACGCCTT CGACGAGGCG AACAAGCCGG TGGCGCTCAG CCTCAAGCCC
GGCTTTGGCG GCTTCCTCAA CTACGACCTG CTGGCAGAGC ACGCCACGGG CCAGACCCGC
TCATCAGGGC TGTTCGAGGC CGGTGTCTTC AACGGCTTGG GCGTGGGCGT TGCCAGCTTT
GTGGCCAACA GCGGTGACAC TGAGCACCGG CTCATCCGCC TGGAAACCAC CTGGACCAAG
GACCTTCCGG ATCATCTCTC CAGCGTACGT CTGGGCGATT CGATCAGCCG GGCCGGCGCG
TGGGGGCGCA GCGTGCGCTT TGGCGGCATT CAATACAGCA CCAACTTCGC CGTGCAGCCC
GGCTTTGTCG CATTGCCGCT GCAGAGCATC GGCGGGCAGG CCGCGCTTCC ATCGACCGTC
GATGTCTACG TCAACAACGT GCTGAGTTCA CGCAAGGACG TCGCACCGGG ACCGTTCTCG
ATCACCAACG TGCCCGTGGT GACGGGGCAG GGCGACGTGC GCGTCGTCGT GCGCGATCTG
CTGGGGCGCG AACAGGTGAT CAGCGTGCCG TTCTACGCGA GCGCCAGCCT GCTTGCCAAG
GGGCTGCACG ATTTCTCGTA CGAAGCCGGC GCCGAACGCA GGAACTTCGG CACCGATAGC
AACGACTATG GCCGGGCCTT CGCCGCGGCG ACCCATCGCC TCGGTTTCAC CGACTGGCTC
ACGGGCGAGG TTCACGCGGA ATCCCAGCTC GAACGTCAGA CTGTCGGCCT CGGCACGGTG
ATGCTGGCGC CGTCGGTTGG CGTTTTCAGT GCGGCGGCCG CTGCCAGTCG GGGACGGCAG
GGCAGTGGAG GCCTCGTCTC CGTTGGCTTC GAGCGGCAGG CCAGCCCCGT CAGCGTGGGT
GTGCATGCGC AACTTGCCAG CCCGCGCTTC ACGCAGCTCG GGCTCGAACT GGACATGCCT
GCACCGCGCC TGCTGAGCAG CGTGAACGTC GGCATGGCGC TGCCGGGCGG CGGCTCGCTG
GGGCTGGCCT ATGTCTACCT GGACAACCGC GATGGCCATC CGACCCAGCT CGCCTCGGCC
AGCTATGGCA CGCAGCTGGG GCGCTTCGGG TTCATCAGCC TGGCCCTCTC CAAGACGCTG
CATCAGCCCG GCGGCCTGAT GGTCGGCCTG AACTGGACGC TGCCGCTGGG CGAGCGTACT
ACCACCTCCA TCAACATGAC CCAGCAACAG GGCCGCACCG AGGTGCAGGC GCAAGTGCAG
CAAGGACTGC CGCCCGGCGA TGGCTTTGGC TACAGCGTGC GGGCCAGCCA GCTCGGCGCG
TGGGACGCCG CCCTGAACGC ACAGAATCGC GTCGGCACCT ATCTGCTGGA AGCCGCCGGC
GATCGTGGGC AGACGGGCGT GCGGATGGGT GCCTCGGGCG GCATCGCGAT ACTCGATGGC
CTGCACCTGA GCCGCCGCAT CTCCGACAGC TTTGCCGTGG TCAAGGTGCC CGATTTCCCC
AACGTACGGA TCTATGCCGA CAACCAGCTC GTCGCCAAAA CCAACGCCAG CGGCGAAGCG
CTCATCCCCC GCCTGCGTGC ATACGAAAAG AATGCGATTT CGCTCGAGCA GTTGGATCTG
CCCTTCGATG CGAAGGTCGG GACCCTGTCG CTGGACGCGG TGCCGTACTA CCGCAGCGGC
ATGGTGCTGG ATTTTCCGGT CACGCATGCG CATGACGCGC TGATGACGCT GAAGTTGGAG
AACGGCAGCG ACCTGCCTGC CGGCGCCACG GTGCAGATCT CCGGACAGAA AGAGGCGTTT
CCGGTCGGTA ACGACGGCGT GGTCTATCTC ACCGGGCTGG CAGCGCAAAA CCGTCTGCAA
GCCAACTGGC GCGGACAGTC GTGTGATATC TCGGTGCCAT TCACACCGGG CGCCGACCCA
TTGCCTGATC TTGGCATTTT CGTTTGCAAA GGAGTCCGAC CATGA
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| Protein sequence | MTLANDAPAP SRTAASDVAE LLLQFDLNQQ GLDDTVLLLK TKGGELYASA EDLKRWRLRQ
PEATPLAHNN EVFYPLKAIT GLSYQLDETL LTVAVTAPAQ AFLPNAFDEA NKPVALSLKP
GFGGFLNYDL LAEHATGQTR SSGLFEAGVF NGLGVGVASF VANSGDTEHR LIRLETTWTK
DLPDHLSSVR LGDSISRAGA WGRSVRFGGI QYSTNFAVQP GFVALPLQSI GGQAALPSTV
DVYVNNVLSS RKDVAPGPFS ITNVPVVTGQ GDVRVVVRDL LGREQVISVP FYASASLLAK
GLHDFSYEAG AERRNFGTDS NDYGRAFAAA THRLGFTDWL TGEVHAESQL ERQTVGLGTV
MLAPSVGVFS AAAAASRGRQ GSGGLVSVGF ERQASPVSVG VHAQLASPRF TQLGLELDMP
APRLLSSVNV GMALPGGGSL GLAYVYLDNR DGHPTQLASA SYGTQLGRFG FISLALSKTL
HQPGGLMVGL NWTLPLGERT TTSINMTQQQ GRTEVQAQVQ QGLPPGDGFG YSVRASQLGA
WDAALNAQNR VGTYLLEAAG DRGQTGVRMG ASGGIAILDG LHLSRRISDS FAVVKVPDFP
NVRIYADNQL VAKTNASGEA LIPRLRAYEK NAISLEQLDL PFDAKVGTLS LDAVPYYRSG
MVLDFPVTHA HDALMTLKLE NGSDLPAGAT VQISGQKEAF PVGNDGVVYL TGLAAQNRLQ
ANWRGQSCDI SVPFTPGADP LPDLGIFVCK GVRP
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